- Transcript HORVU7Hr1G057140.31
- Transcript IDHORVU7Hr1G057140.31
- Gene IDHORVU7Hr1G057140
Barley RTD
Exon Structure of HORVU7Hr1G057140.31
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244650345 | 244650161 | + |
| chr7H | 2 | 244651074 | 244650741 | + |
| chr7H | 3 | 244651293 | 244651173 | + |
| chr7H | 4 | 244652881 | 244651671 | + |
| chr7H | 5 | 244653452 | 244653142 | + |
| chr7H | 6 | 244654225 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +1 | 0.0 | 1063 | 549/812 (68%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+1 | 3e-121 | 394 | 304/867 (35%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.1.p | +1 | 0.0 | 1158 | 589/795 (74%) | pacid=32814334 transcript=Bradi3g42190.1 locus=Bradi3g42190 ID=Bradi3g42190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2799 bp)
>HORVU7Hr1G057140.31 2799 150831_barley_pseudomolecules ATTCATGATTATTTGGTACTAGCATGTTTCCATCATCTCCGAGGTTCTTCTTCTGGACAG AACTTTGTTGACCTAGCTGGAAGTGAGCGAGCATCTCAGACTGCTTCAGCTGGTATGAGG TTAAAAGAAGGTAGTCATATTAATCGAAGTCTGCTAACACTGGGAAAGGTTGTTCGCCAA CTCAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGCTGACACGCATATTA CAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAATGAGCCCTGCACAC ACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCGCAAAGGAGGTAGTT ACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGAAGCATCTACAGAGA GAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCTCCTGCACTAGTCAT GCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAAAAACAGCTTAGGGAA TTGATAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACTGAGAAGTGATGGT GACGACCATGACAATGATCGTGCTGCAAAGCGATGGGTACTCCATAGTCGGTCCTCAGAG TCTCTTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACACTTATGGAGGTTCT TATCAAGATCAAGGTCACGCAGTGTTTGATGGATCATATGTCTTCAGTGCTGATCATGAT GGCTTGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCAAACAAGGGTTCGGCAGCCA GTTTCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTCATATAACATA AAGGAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAGGGAAGTGCAA TGTATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGTATTACTCCAT GAGGGCACTAAGCTCCACATACCTGAAGTAGAGGACATCTCTAGAGACGCAGTCCCGCAA CCTGATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGATCATATGAAGATA TACGCTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGTAGAAGATCCTATT GAAGTGCATCAATGTGAATCTGATGACTTTGCACACAACTTTGTCAAACTGTACCCATGT GATTCTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCATGAATGTCTTACTGTAAAG AGGTGTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAGCTGCAGGGCTAGC TTCATGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAACACCAGGCAGACACCACCT GATGAAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAGTCTGTACCAA GGAAATGATGATTGCCAAAACAATAACACTTCAGTAGACCTCTCTGCTGATTCTGGAGAA GTAGTTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGTCAAGGACATGAGC ACCAGTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGAAGTAGTTAAGGCCATGAGC ACCAGTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGGCAAGGAGTCGAGT ACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGTCACAGAGCTGGAA CAGAAGACAGCAAAACACCATGAGGACCAACCCGAGGAACATGAGGCAGAGCAGCAGACT GTTAGAGATGAGTGTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGACGCAGTCCCG AGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCAGCGGGAGATC ATCGAGTTGTGGCACGACTGCAACGTGTCCCTAGTACACAGGACCTACTTCTTCCTCCTC TTCAAGGGAGATGCTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAGACTGTCCTTC ATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGCAATCGCGTCC AGCTTGAAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAGCTC GCCAACGGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGGGCTCCAAACAG CGGCGGCTTCAGCTATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCATGTCCGGGAG AGCGCCTCGCTGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAGGAG ATGTTCAGCCTCAACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTGCTA CTAGGCGCGTGATCTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTACAA GGAGGTTGACTTAACAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGTTTCACGCAT GTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGCGTG TGTGATATTTCTGTGTGCAGTCTCACAAAAGTGAATCAATCAGACAGTACAGCTCTCCCT ACCTTGCGTCGTATGTTCGTTTGTAAGAGTTTGTTCGTCAACCAAAATTTTGGAAGCCAT GCGTGGGAGCATCGCACCATCCGGAATTTCCTATTTGCC