- Transcript HORVU7Hr1G057140.30
- Transcript IDHORVU7Hr1G057140.30
- Gene IDHORVU7Hr1G057140
Barley RTD
Exon Structure of HORVU7Hr1G057140.30
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244649826 | 244649740 | + |
| chr7H | 2 | 244649975 | 244649908 | + |
| chr7H | 3 | 244650141 | 244650076 | + |
| chr7H | 4 | 244650345 | 244650221 | + |
| chr7H | 5 | 244651074 | 244650741 | + |
| chr7H | 6 | 244651289 | 244651173 | + |
| chr7H | 7 | 244652881 | 244651667 | + |
| chr7H | 8 | 244653452 | 244653142 | + |
| chr7H | 9 | 244654211 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +3 | 0.0 | 1194 | 608/874 (70%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+3 | 1e-156 | 490 | 352/940 (37%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.1.p | +3 | 0.0 | 1295 | 655/868 (75%) | pacid=32814334 transcript=Bradi3g42190.1 locus=Bradi3g42190 ID=Bradi3g42190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2946 bp)
>HORVU7Hr1G057140.30 2946 150831_barley_pseudomolecules AACAGAAAGGGACTACTGTTGAAAAGCTTACCGAGGAAACATTGAGGGACAAGGACCATC TTAGGGATCTTCTTGGAATGTGTGAAGCTCAAAGAGAGATTGGAGAAACGGCTTTGAACG AAGCGAGTTCTAGGTCCCACCAAATACTCAGGCTGACAATCGAAAGTTCTGTTAAGCAGT ATTTAGGAAGAAGCAAATCGAGCACCCTGGTGTCTTGTGTGAACTTTGTTGACCTAGCTG GAAGTGAGCGAGCATCTCAGACTGCTTCAGCTGGTATGAGGTTAAAAGAAGGTAGTCATA TTAATCGAAGTCTGCTAACACTGGGAAAGGTTGTTCGCCAACTCAGCAAGGGAAGAAATG GTCATATCCCTTATAGAGATTCAAAGCTGACACGCATATTACAGTCCTCTTTGGGAGGCA ATGCAAGAACAGCCATTGTCTGCACAATGAGCCCTGCACACACTCATATTGAGCAATCCA GGAACACACTTCTGTTTGCGACTTGCGCAAAGGAGGTAGTTACAAATGCACAGGTCAATG TAGTGATGTCTGACAAAGCACTACTGAAGCATCTACAGAGAGAGCTCGCAAGATTAGAAA ATGAACTGAAATTGCCGGAGTCAGCCTCCTGCACTAGTCATGCTGAAGCTTTAAGAGAGA AGGATGCACAGATTAAAAAGCTGGAAAAACAGCTTAGGGAATTGATAGAAGAAAAGGACA CCGTTCAGTCTCAACTTAACTGTTTACTGAGAAGTGATGGTGACGACCATGACAATGATC GTGCTGCAAAGCGATGGGATGTCCATAGTCGGTCCTCAGAGTCTCTTGCACGAAATGCAT CGGAGGAAGCACTTTCGGTTTCAGACACTTATGGAGGTTCTTATCAAGATCAAGGTCACG CAGTGTTTGATGGATCATATGTCTTCAGTGCTGATCATGATGGCTTGTCATCCCCCAATA AACCAATGGATCTTCCTCAGCAAACAAGGGTTCGGCAGCCAGTTTCACCTTGGCACCCTA CTAGCAACTATAGCTCTGATGGTGCGGAGTCATATAACATAAAGGAGGTAGCTTTCAGAA CTGCATCTGAGGTATCCGAAGAACATTGTAGGGAAGTGCAATGTATAGAGATACATGAGC ATAGAAGAAGCACAAGCCAGGAATTTAACGTATTACTCCATGAGGGCACTAAGCTCCACA TACCTGAAGTAGAGGACATCTCTAGAGACGCAGTCCCGCAACCTGATGAAGTGCTAGAAG CAGGGAGCATAACAGAAAAAATGGAAGATCATATGAAGATATACGCTAGCAAAGAGGAGC AGCAGGCCGAGATCATAGCAAATGCAGTAGAAGATCCTATTGAAGTGCATCAATGTGAAT CTGATGACTTTGCACACAACTTTGTCAAACTGTACCCATGTGATTCTAACATTTCTCTGG ACGTTGGCAAACCTTACCCTCATGAATGTCTTACTGTAAAGAGGTGTATAACGAGCTCCA AGGATAGTGCATTGGCTAGAAGTCAAAGCTGCAGGGCTAGCTTCATGATCATTCCAAATA GTTGGTTTGATGATTCGGAAAACACCAGGCAGACACCACCTGATGAAATCTTCAGGTATC CTCCCAGAAGGCCTGATAAAGTCAGGAGAAGTCTGTACCAAGGAAATGATGATTGCCAAA ACAATAACACTTCAGTAGACCTCTCTGCTGATTCTGGAGAAGTAGTTTGTGATGAAGTAG TTAAGGACACAGGTACCAGTGATGCAGTCAAGGACATGAGCACCAGTGCTGAAGTAGTCA AGGACATGAGTACCAATGATGAAGTAGTTAAGGCCATGAGCACCAGTGATGAAGTAGTCA AGGACATGAGCACCAGTGATGAAGTAGGCAAGGAGTCGAGTACCAGTGAAGCAGAACAAG AAGTTTGTATGGGTGACATCAGTTGTGTCACAGAGCTGGAACAGAAGACAGCAAAACACC ATGAGGACCAACCCGAGGAACATGAGGCAGAGCAGCAGACTGTTAGAGATGAGTGTACAG CAGTTAAAACTGTCAAAGATGTTGGCATAGACGCAGTCCCGAGTACCGCCGAGTCTCCTT CGTGCTGGCCTATTGATTTTGCAAATAGGCAGCGGGAGATCATCGAGTTGTGGCACGACT GCAACGTGTCCCTAGTACACAGGACCTACTTCTTCCTCCTCTTCAAGGGAGATGCTGCAG ATAGCGTCTACATGGAAGTGGAGCACAGGAGACTGTCCTTCATCCTCAGCTCGTTCAGCA CCAACTCCGCAGGAGGCGAGCTTAACTCCGCAATCGCGTCCAGCTTGAAGAATCTGAAAC GTGAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAGCTCGCCAACGGGGACAAGGAGG GCATCTACACCAGATGGGGGATCGATCTGGGCTCCAAACAGCGGCGGCTTCAGCTATCTC GCCTCGTATGGACGCGGGCTGACATGGAGCATGTCCGGGAGAGCGCCTCGCTGGTGGCGA GGCTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAGGAGATGTTCAGCCTCAACTTCA CACTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTGCTACTAGGCGCGTGATCTTTGA CGTACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTACAAGGAGGTTGACTTAACAGGA GAAGAGGACTATGCTGCGTATCATCGATTGGTTTCACGCATGTGTCTCTGCCTTGTTTTT GCTCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGCGTGTGTGATATTTCTGTGTGCA GTCTCACAAAAGTGAATCAATCAGACAGTACAGCTCTCCCTACCTTGCGTCGTATGTTCG TTTGTAAGAGTTTGTTCGTCAACCAAAATTTTGGAAGCCATGCGTGGGAGCATCGCACCA TCCGGA