- Transcript HORVU7Hr1G057140.28
- Transcript IDHORVU7Hr1G057140.28
- Gene IDHORVU7Hr1G057140
Barley RTD
Exon Structure of HORVU7Hr1G057140.28
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244649246 | 244649171 | + |
| chr7H | 2 | 244649654 | 244649354 | + |
| chr7H | 3 | 244649975 | 244649745 | + |
| chr7H | 4 | 244650141 | 244650076 | + |
| chr7H | 5 | 244650345 | 244650221 | + |
| chr7H | 6 | 244651074 | 244650741 | + |
| chr7H | 7 | 244651289 | 244651173 | + |
| chr7H | 8 | 244652881 | 244651667 | + |
| chr7H | 9 | 244653452 | 244653145 | + |
| chr7H | 10 | 244654080 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +3 | 0.0 | 1256 | 643/938 (69%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+3 | 2e-177 | 542 | 385/1004 (38%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.2.p | +3 | 0.0 | 1354 | 691/932 (74%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3265 bp)
>HORVU7Hr1G057140.28 3265 150831_barley_pseudomolecules CCCAATTGCTCTACCAGACAGGTCTACGAGGAAGGAGCAAAAGAAGTTGCTCTATCAGTT GTCAGTGGAATCAACTCAAGCATATTTGCGTATGGGCAAACAAGCAGCGGAAAGACTTAC ACAATGACTGGAATTACTGAGTACAGTGTGATGGACATTTATGACTACATAGAGAAGGTG TGCGTGTGCGTATGCGTGGCACGGATGATGTTATACTTCACTTCGCGAGATGATATTTGC CTCATTGTTTGTCATTGCTACAGCACCCTGAAAGAGAATTCATGCTGAAATTCTCAGCAA TAGAGATATATAATGAAGCTGTGAGGGATCTTCTGAGCCATGATACGACACCTCTTAGAC TGCTTGACGATCCTGAGAAAGGGACTACTGTTGAAAAGCTTACCGAGGAAACATTGAGGG ACAAGGACCATCTTAGGGATCTTCTTGGAATGTGTGAAGGTGCGGGCAAAAATTTCTAGA AACAAAACATGCACCATGTTTGTTCTTTTAATCATTTGCTTAATTTGGTATGTACTGCAG CTCAAAGAGAGATTGGAGAAACGGCTTTGAACGAAGCGAGTTCTAGGTCCCACCAAATAC TCAGGCTGACAATCGAAAGTTCTGTTAAGCAGTATTTAGGAAGAAGCAAATCGAGCACCC TGGTGTCTTGTGTGAACTTTGTTGACCTAGCTGGAAGTGAGCGAGCATCTCAGACTGCTT CAGCTGGTATGAGGTTAAAAGAAGGTAGTCATATTAATCGAAGTCTGCTAACACTGGGAA AGGTTGTTCGCCAACTCAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGC TGACACGCATATTACAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAA TGAGCCCTGCACACACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCG CAAAGGAGGTAGTTACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGA AGCATCTACAGAGAGAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCT CCTGCACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAAA AACAGCTTAGGGAATTGATAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTAC TGAGAAGTGATGGTGACGACCATGACAATGATCGTGCTGCAAAGCGATGGGATGTCCATA GTCGGTCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACA CTTATGGAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTTGATGGATCATATGTCTTCA GTGCTGATCATGATGGCTTGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCAAACAA GGGTTCGGCAGCCAGTTTCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCGG AGTCATATAACATAAAGGAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACATT GTAGGGAAGTGCAATGTATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTTA ACGTATTACTCCATGAGGGCACTAAGCTCCACATACCTGAAGTAGAGGACATCTCTAGAG ACGCAGTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAG ATCATATGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAG TAGAAGATCCTATTGAAGTGCATCAATGTGAATCTGATGACTTTGCACACAACTTTGTCA AACTGTACCCATGTGATTCTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCATGAAT GTCTTACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAA GCTGCAGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAACACCA GGCAGACACCACCTGATGAAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGA GAAGTCTGTACCAAGGAAATGATGATTGCCAAAACAATAACACTTCAGTAGACCTCTCTG CTGATTCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAG TCAAGGACATGAGCACCAGTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGAAGTAG TTAAGGCCATGAGCACCAGTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAG GCAAGGAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTG TCACAGAGCTGGAACAGAAGACAGCAAAACACCATGAGGACCAACCCGAGGAACATGAGG CAGAGCAGACTGTTAGAGATGAGTGTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAG ACGCAGTCCCGAGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGC AGCGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGTCCCTAGTACACAGGACCTACT TCTTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGA GACTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCG CAATCGCGTCCAGCTTGAAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGC TCAAGAAGCTCGCCAACGGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGG GCTCCAAACAGCGGCGGCTTCAGCTATCTCGCCTCGTATGGACGCGGGCTGACATGGAGC ATGTCCGGGAGAGCGCCTCGCTGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGG CTCTCAAGGAGATGTTCAGCCTCAACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTT TCAGCCTGCTACTAGGCGCGTGATCTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCT AGTAAGTACAAGGAGGTTGACTTAACAGGAGAAGAGGACTATGCTGCGTATCATCGATTG GTTTCACGCATGTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGT GCGCGTGCGTGTGTGATATTTCTGT