Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G057140.26

ChromosomeExonStartStopDirection
chr7H1244649246244649160+
chr7H2244649654244649354+
chr7H3244649826244649745+
chr7H4244649975244649908+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g43400.1 +2 9e-74 169 81/89 (91%) protein|kinesin motor domain containing protein, expressed
TAIR PP10 AT3G51150 @ ARAPORT
AT3G51150.1 @ TAIR		 +2 4e-63 145 69/89 (78%) Symbols: | ATP binding microtubule motor family protein | chr3:19002006-19006509 FORWARD LENGTH=1052
BRACH PP3 Bradi3g42190.1.p +2 9e-76 173 84/89 (94%) pacid=32814334 transcript=Bradi3g42190.1 locus=Bradi3g42190 ID=Bradi3g42190.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (538 bp)

>HORVU7Hr1G057140.26 538 150831_barley_pseudomolecules
GGGTGTTTGGCCCCAATTGCTCTACCAGACAGGTCTACGAGGAAGGAGCAAAAGAAGTTG
CTCTATCAGTTGTCAGTGGAATCAACTCAAGCATATTTGCGTATGGGCAAACAAGCAGCG
GAAAGACTTACACAATGACTGGAATTACTGAGTACAGTGTGATGGACATTTATGACTACA
TAGAGAAGGTGTGCGTGTGCGTATGCGTGGCACGGATGATGTTATACTTCACTTCGCGAG
ATGATATTTGCCTCATTGTTTGTCATTGCTACAGCACCCTGAAAGAGAATTCATGCTGAA
ATTCTCAGCAATAGAGATATATAATGAAGCTGTGAGGGATCTTCTGAGCCATGATACGAC
ACCTCTTAGACTGCTTGACGATCCTGAGAAAGGGACTACTGTTGAAAAGCTTACCGAGGA
AACATTGAGGGACAAGGACCATCTTAGGGATCTTCTTGGAATGTGTGAAGCTCAAAGAGA
GATTGGAGAAACGGCTTTGAACGAAGCGAGTTCTAGGTCCCACCAAATACTCAGGCTG