Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G057140.24

ChromosomeExonStartStopDirection
chr7H1244649011244648843+
chr7H2244649246244649157+
chr7H3244649454244649354+
chr7H4244649654244649541+
chr7H5244649826244649745+
chr7H6244649975244649908+
chr7H7244650141244650076+
chr7H8244650345244650221+
chr7H9244651074244650741+
chr7H10244651289244651173+
chr7H11244651768244651667+
chr7H12244652077244651858+
chr7H13244652523244652231+
chr7H14244652875244652710+
chr7H15244653171244653142+
chr7H16244653452244653223+
chr7H17244653693244653589+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g43400.2 +1 0.0 835 400/452 (88%) protein|kinesin motor domain containing protein, expressed
TAIR PP10 AT3G51150 @ ARAPORT
AT3G51150.1 @ TAIR		 +1 0.0 592 284/412 (69%) Symbols: | ATP binding microtubule motor family protein | chr3:19002006-19006509 FORWARD LENGTH=1052
BRACH PP3 Bradi3g42190.2.p +1 0.0 817 402/449 (90%) pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2412 bp)

>HORVU7Hr1G057140.24 2412 150831_barley_pseudomolecules
GAGAAGGTGGAGGCCAAGGAGGAGAGGATCATGGTGTCCGTGCGGGTGCGGCCCCTGAAC
GGCAGGGAGTCCGGCGACAGCTCCGACTGGGAGTGCATTAGCCCCACCACCGTCATGTTC
CGGAGTACCGTTCCTGACCGCGCCATGTTCCCCACCGCCTACACCTATGACAGGGTGTTT
GGCCCCAATTGCTCTACCAGACAGGTCTACGAGGAAGGAGCAAAAGAAGTTGCTCTATCA
GTTGTCAGTGGAATCAACTCAAGCATATTTGCGTATGGGCAAACAAGCAGCGGAAAGACT
TACACAATGACTGGAATTACTGAGTACAGTGTGATGGACATTTATGACTACATAGAGAAG
CACCCTGAAAGAGAATTCATGCTGAAATTCTCAGCAATAGAGATATATAATGAAGCTGTG
AGGGATCTTCTGAGCCATGATACGACACCTCTTAGACTGCTTGACGATCCTGAGAAAGGG
ACTACTGTTGAAAAGCTTACCGAGGAAACATTGAGGGACAAGGACCATCTTAGGGATCTT
CTTGGAATGTGTGAAGCTCAAAGAGAGATTGGAGAAACGGCTTTGAACGAAGCGAGTTCT
AGGTCCCACCAAATACTCAGGCTGACAATCGAAAGTTCTGTTAAGCAGTATTTAGGAAGA
AGCAAATCGAGCACCCTGGTGTCTTGTGTGAACTTTGTTGACCTAGCTGGAAGTGAGCGA
GCATCTCAGACTGCTTCAGCTGGTATGAGGTTAAAAGAAGGTAGTCATATTAATCGAAGT
CTGCTAACACTGGGAAAGGTTGTTCGCCAACTCAGCAAGGGAAGAAATGGTCATATCCCT
TATAGAGATTCAAAGCTGACACGCATATTACAGTCCTCTTTGGGAGGCAATGCAAGAACA
GCCATTGTCTGCACAATGAGCCCTGCACACACTCATATTGAGCAATCCAGGAACACACTT
CTGTTTGCGACTTGCGCAAAGGAGGTAGTTACAAATGCACAGGTCAATGTAGTGATGTCT
GACAAAGCACTACTGAAGCATCTACAGAGAGAGCTCGCAAGATTAGAAAATGAACTGAAA
TTGCCGGAGTCAGCCTCCTGCACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATGCACAG
ATTAAAAAGCTGGAAAAACAGCTTAGGGAATTGATAGAAGAAAAGGACACCGTTCAGTCT
CAACTTAACTGTTTACTGAGAAGTGATGGTGACGACCATGACAATGATCGTGCTGCAAAG
CGATGGGATGTCCATAGTCGGTCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAAGCA
CTTTCGGTTTCAGACACTTATGGAGGTTCTTATCAAGATCAAGGTCACGGTTCGGCAGCC
AGTTTCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTCATATAACAT
AAAGGAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAGGGAAGTGCA
ATGTATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGTATTACTCCA
TGAGGGCACTAAGCTCCACATACCTGAAGAAGTGCATCAATGTGAATCTGATGACTTTGC
ACACAACTTTGTCAAACTGTACCCATGTGATTCTAACATTTCTCTGGACGTTGGCAAACC
TTACCCTCATGAATGTCTTACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGTGCATT
GGCTAGAAGTCAAAGCTGCAGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTTGATGA
TTCGGAAAACACCAGGCAGACACCACCTGATGAAATCTTCAGGTATCCTCCCAGAAGGCC
TGATAAAGTCAGGAGAAGTCTCACCAGTGATGAAGTAGTCAAGGACATGAGCACCAGTGA
TGAAGTAGGCAAGGAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTGACAT
CAGTTGTGTCACAGAGCTGGAACAGAAGACAGCAAAACACCATGAGGACCAACCCGAGGA
ACATGAGCAGCAGACTGTTAGAGATGAGTGTACAGCATCTCCTTCGTGCTGGCCTATTGA
TTTTGCAAATAGGCAGCGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGTCCCTAGT
ACACAGGACCTACTTCTTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCTACATGGA
AGTGGAGCACAGGAGACTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAGG
CGAGCTTAACTCCGCAATCGCGTCCAGCTTGAAGAATCTGAAACGTGAGAGGGACATGTT
CTACAAGCAGATGCTCAAGAAGCTCGCCAACGGGGACAAGGAGGGCATCTACACCAGATG
GGGGATCGATCT