- Transcript HORVU7Hr1G057140.17
- Transcript IDHORVU7Hr1G057140.17
- Gene IDHORVU7Hr1G057140
Barley RTD
Exon Structure of HORVU7Hr1G057140.17
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648292 | 244648231 | + |
| chr7H | 2 | 244649011 | 244648793 | + |
| chr7H | 3 | 244649246 | 244649157 | + |
| chr7H | 4 | 244649454 | 244649354 | + |
| chr7H | 5 | 244649654 | 244649541 | + |
| chr7H | 6 | 244649975 | 244649745 | + |
| chr7H | 7 | 244650141 | 244650076 | + |
| chr7H | 8 | 244650345 | 244650221 | + |
| chr7H | 9 | 244651074 | 244650741 | + |
| chr7H | 10 | 244651289 | 244651173 | + |
| chr7H | 11 | 244652881 | 244651667 | + |
| chr7H | 12 | 244653452 | 244653145 | + |
| chr7H | 13 | 244654189 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.2 | +2 | 0.0 | 1480 | 748/1049 (71%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+2 | 0.0 | 702 | 454/1116 (41%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.2.p | +2 | 0.0 | 1558 | 791/1043 (76%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3583 bp)
>HORVU7Hr1G057140.17 3583 150831_barley_pseudomolecules CCTCGCGCGGAATGTGATCAGTGCTTGGTTCTGTTGGATAATGGCTGTTACTACGTGCTC GGGGCTGAGAAGGGCGATGGGGGCGGGGGAGGAGGATGCGGCGGCGGCATGGGAGAAGGT GGAGGCCAAGGAGGAGAGGATCATGGTGTCCGTGCGGGTGCGGCCCCTGAACGGCAGGGA GTCCGGCGACAGCTCCGACTGGGAGTGCATTAGCCCCACCACCGTCATGTTCCGGAGTAC CGTTCCTGACCGCGCCATGTTCCCCACCGCCTACACCTATGACAGGGTGTTTGGCCCCAA TTGCTCTACCAGACAGGTCTACGAGGAAGGAGCAAAAGAAGTTGCTCTATCAGTTGTCAG TGGAATCAACTCAAGCATATTTGCGTATGGGCAAACAAGCAGCGGAAAGACTTACACAAT GACTGGAATTACTGAGTACAGTGTGATGGACATTTATGACTACATAGAGAAGCACCCTGA AAGAGAATTCATGCTGAAATTCTCAGCAATAGAGATATATAATGAAGCTGTGAGGGATCT TCTGAGCCATGATACGACACCTCTTAGACTGCTTGACGATCCTGAGAAAGGGACTACTGT TGAAAAGCTTACCGAGGAAACATTGAGGGACAAGGACCATCTTAGGGATCTTCTTGGAAT GTGTGAAGGTGCGGGCAAAAATTTCTAGAAACAAAACATGCACCATGTTTGTTCTTTTAA TCATTTGCTTAATTTGGTATGTACTGCAGCTCAAAGAGAGATTGGAGAAACGGCTTTGAA CGAAGCGAGTTCTAGGTCCCACCAAATACTCAGGCTGACAATCGAAAGTTCTGTTAAGCA GTATTTAGGAAGAAGCAAATCGAGCACCCTGGTGTCTTGTGTGAACTTTGTTGACCTAGC TGGAAGTGAGCGAGCATCTCAGACTGCTTCAGCTGGTATGAGGTTAAAAGAAGGTAGTCA TATTAATCGAAGTCTGCTAACACTGGGAAAGGTTGTTCGCCAACTCAGCAAGGGAAGAAA TGGTCATATCCCTTATAGAGATTCAAAGCTGACACGCATATTACAGTCCTCTTTGGGAGG CAATGCAAGAACAGCCATTGTCTGCACAATGAGCCCTGCACACACTCATATTGAGCAATC CAGGAACACACTTCTGTTTGCGACTTGCGCAAAGGAGGTAGTTACAAATGCACAGGTCAA TGTAGTGATGTCTGACAAAGCACTACTGAAGCATCTACAGAGAGAGCTCGCAAGATTAGA AAATGAACTGAAATTGCCGGAGTCAGCCTCCTGCACTAGTCATGCTGAAGCTTTAAGAGA GAAGGATGCACAGATTAAAAAGCTGGAAAAACAGCTTAGGGAATTGATAGAAGAAAAGGA CACCGTTCAGTCTCAACTTAACTGTTTACTGAGAAGTGATGGTGACGACCATGACAATGA TCGTGCTGCAAAGCGATGGGATGTCCATAGTCGGTCCTCAGAGTCTCTTGCACGAAATGC ATCGGAGGAAGCACTTTCGGTTTCAGACACTTATGGAGGTTCTTATCAAGATCAAGGTCA CGCAGTGTTTGATGGATCATATGTCTTCAGTGCTGATCATGATGGCTTGTCATCCCCCAA TAAACCAATGGATCTTCCTCAGCAAACAAGGGTTCGGCAGCCAGTTTCACCTTGGCACCC TACTAGCAACTATAGCTCTGATGGTGCGGAGTCATATAACATAAAGGAGGTAGCTTTCAG AACTGCATCTGAGGTATCCGAAGAACATTGTAGGGAAGTGCAATGTATAGAGATACATGA GCATAGAAGAAGCACAAGCCAGGAATTTAACGTATTACTCCATGAGGGCACTAAGCTCCA CATACCTGAAGTAGAGGACATCTCTAGAGACGCAGTCCCGCAACCTGATGAAGTGCTAGA AGCAGGGAGCATAACAGAAAAAATGGAAGATCATATGAAGATATACGCTAGCAAAGAGGA GCAGCAGGCCGAGATCATAGCAAATGCAGTAGAAGATCCTATTGAAGTGCATCAATGTGA ATCTGATGACTTTGCACACAACTTTGTCAAACTGTACCCATGTGATTCTAACATTTCTCT GGACGTTGGCAAACCTTACCCTCATGAATGTCTTACTGTAAAGAGGTGTATAACGAGCTC CAAGGATAGTGCATTGGCTAGAAGTCAAAGCTGCAGGGCTAGCTTCATGATCATTCCAAA TAGTTGGTTTGATGATTCGGAAAACACCAGGCAGACACCACCTGATGAAATCTTCAGGTA TCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAGTCTGTACCAAGGAAATGATGATTGCCA AAACAATAACACTTCAGTAGACCTCTCTGCTGATTCTGGAGAAGTAGTTTGTGATGAAGT AGTTAAGGACACAGGTACCAGTGATGCAGTCAAGGACATGAGCACCAGTGCTGAAGTAGT CAAGGACATGAGTACCAATGATGAAGTAGTTAAGGCCATGAGCACCAGTGATGAAGTAGT CAAGGACATGAGCACCAGTGATGAAGTAGGCAAGGAGTCGAGTACCAGTGAAGCAGAACA AGAAGTTTGTATGGGTGACATCAGTTGTGTCACAGAGCTGGAACAGAAGACAGCAAAACA CCATGAGGACCAACCCGAGGAACATGAGGCAGAGCAGACTGTTAGAGATGAGTGTACAGC AGTTAAAACTGTCAAAGATGTTGGCATAGACGCAGTCCCGAGTACCGCCGAGTCTCCTTC GTGCTGGCCTATTGATTTTGCAAATAGGCAGCGGGAGATCATCGAGTTGTGGCACGACTG CAACGTGTCCCTAGTACACAGGACCTACTTCTTCCTCCTCTTCAAGGGAGATGCTGCAGA TAGCGTCTACATGGAAGTGGAGCACAGGAGACTGTCCTTCATCCTCAGCTCGTTCAGCAC CAACTCCGCAGGAGGCGAGCTTAACTCCGCAATCGCGTCCAGCTTGAAGAATCTGAAACG TGAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAGCTCGCCAACGGGGACAAGGAGGG CATCTACACCAGATGGGGGATCGATCTGGGCTCCAAACAGCGGCGGCTTCAGCTATCTCG CCTCGTATGGACGCGGGCTGACATGGAGCATGTCCGGGAGAGCGCCTCGCTGGTGGCGAG GCTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAGGAGATGTTCAGCCTCAACTTCAC ACTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTGCTACTAGGCGCGTGATCTTTGAC GTACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTACAAGGAGGTTGACTTAACAGGAG AAGAGGACTATGCTGCGTATCATCGATTGGTTTCACGCATGTGTCTCTGCCTTGTTTTTG CTCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGCGTGTGTGATATTTCTGTGTGCAG TCTCACAAAAGTGAATCAATCAGACAGTACAGCTCTCCCTACCTTGCGTCGTATGTTCGT TTGTAAGAGTTTGTTCGTCAACCAAAATTTTGGAAGCCATGCG