- Transcript HORVU7Hr1G057140.12
- Transcript IDHORVU7Hr1G057140.12
- Gene IDHORVU7Hr1G057140
Barley RTD
Exon Structure of HORVU7Hr1G057140.12
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244648049 | + |
| chr7H | 2 | 244649011 | 244648793 | + |
| chr7H | 3 | 244649246 | 244649157 | + |
| chr7H | 4 | 244649454 | 244649354 | + |
| chr7H | 5 | 244649654 | 244649541 | + |
| chr7H | 6 | 244649975 | 244649745 | + |
| chr7H | 7 | 244650141 | 244650076 | + |
| chr7H | 8 | 244650345 | 244650221 | + |
| chr7H | 9 | 244651074 | 244650741 | + |
| chr7H | 10 | 244651289 | 244651173 | + |
| chr7H | 11 | 244652881 | 244651667 | + |
| chr7H | 12 | 244653452 | 244653142 | + |
| chr7H | 13 | 244654189 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.2 | +1 | 0.0 | 1477 | 749/1050 (71%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+1 | 0.0 | 703 | 458/1120 (41%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.1.p | +1 | 0.0 | 1563 | 792/1044 (76%) | pacid=32814334 transcript=Bradi3g42190.1 locus=Bradi3g42190 ID=Bradi3g42190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3672 bp)
>HORVU7Hr1G057140.12 3672 150831_barley_pseudomolecules CTTCCCCTCCTCCTCCTCCTATTCTTCTTCTCGGCACCAACAAGGAGGAGCAGAAGAGGA GAGGGGGCGACACAGTCTTGCCACTAGCTGCATTTCTCTCCTCTCGCATTGGTCGTCTTC TAGTTCCACCGTCCACCAGGGTGCGCAGGGCTGAGAAGGGCGATGGGGGCGGGGGAGGAG GATGCGGCGGCGGCATGGGAGAAGGTGGAGGCCAAGGAGGAGAGGATCATGGTGTCCGTG CGGGTGCGGCCCCTGAACGGCAGGGAGTCCGGCGACAGCTCCGACTGGGAGTGCATTAGC CCCACCACCGTCATGTTCCGGAGTACCGTTCCTGACCGCGCCATGTTCCCCACCGCCTAC ACCTATGACAGGGTGTTTGGCCCCAATTGCTCTACCAGACAGGTCTACGAGGAAGGAGCA AAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAACTCAAGCATATTTGCGTATGGGCAA ACAAGCAGCGGAAAGACTTACACAATGACTGGAATTACTGAGTACAGTGTGATGGACATT TATGACTACATAGAGAAGCACCCTGAAAGAGAATTCATGCTGAAATTCTCAGCAATAGAG ATATATAATGAAGCTGTGAGGGATCTTCTGAGCCATGATACGACACCTCTTAGACTGCTT GACGATCCTGAGAAAGGGACTACTGTTGAAAAGCTTACCGAGGAAACATTGAGGGACAAG GACCATCTTAGGGATCTTCTTGGAATGTGTGAAGGTGCGGGCAAAAATTTCTAGAAACAA AACATGCACCATGTTTGTTCTTTTAATCATTTGCTTAATTTGGTATGTACTGCAGCTCAA AGAGAGATTGGAGAAACGGCTTTGAACGAAGCGAGTTCTAGGTCCCACCAAATACTCAGG CTGACAATCGAAAGTTCTGTTAAGCAGTATTTAGGAAGAAGCAAATCGAGCACCCTGGTG TCTTGTGTGAACTTTGTTGACCTAGCTGGAAGTGAGCGAGCATCTCAGACTGCTTCAGCT GGTATGAGGTTAAAAGAAGGTAGTCATATTAATCGAAGTCTGCTAACACTGGGAAAGGTT GTTCGCCAACTCAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGCTGACA CGCATATTACAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAATGAGC CCTGCACACACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCGCAAAG GAGGTAGTTACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGAAGCAT CTACAGAGAGAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCTCCTGC ACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAAAAACAG CTTAGGGAATTGATAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACTGAGA AGTGATGGTGACGACCATGACAATGATCGTGCTGCAAAGCGATGGGATGTCCATAGTCGG TCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACACTTAT GGAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTTGATGGATCATATGTCTTCAGTGCT GATCATGATGGCTTGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCAAACAAGGGTT CGGCAGCCAGTTTCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTCA TATAACATAAAGGAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAGG GAAGTGCAATGTATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGTA TTACTCCATGAGGGCACTAAGCTCCACATACCTGAAGTAGAGGACATCTCTAGAGACGCA GTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGATCAT ATGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGTAGAA GATCCTATTGAAGTGCATCAATGTGAATCTGATGACTTTGCACACAACTTTGTCAAACTG TACCCATGTGATTCTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCATGAATGTCTT ACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAGCTGC AGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAACACCAGGCAG ACACCACCTGATGAAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAGT CTGTACCAAGGAAATGATGATTGCCAAAACAATAACACTTCAGTAGACCTCTCTGCTGAT TCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGTCAAG GACATGAGCACCAGTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGAAGTAGTTAAG GCCATGAGCACCAGTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGGCAAG GAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGTCACA GAGCTGGAACAGAAGACAGCAAAACACCATGAGGACCAACCCGAGGAACATGAGGCAGAG CAGCAGACTGTTAGAGATGAGTGTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGAC GCAGTCCCGAGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCAG CGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGTCCCTAGTACACAGGACCTACTTC TTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAGA CTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGCA ATCGCGTCCAGCTTGAAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTC AAGAAGCTCGCCAACGGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGGGC TCCAAACAGCGGCGGCTTCAGCTATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCAT GTCCGGGAGAGCGCCTCGCTGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCT CTCAAGGAGATGTTCAGCCTCAACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTC AGCCTGCTACTAGGCGCGTGATCTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAG TAAGTACAAGGAGGTTGACTTAACAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGT TTCACGCATGTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGC GCGTGCGTGTGTGATATTTCTGTGTGCAGTCTCACAAAAGTGAATCAATCAGACAGTACA GCTCTCCCTACCTTGCGTCGTATGTTCGTTTGTAAGAGTTTGTTCGTCAACCAAAATTTT GGAAGCCATGCG