- Transcript HORVU7Hr1G057140.11
- Transcript IDHORVU7Hr1G057140.11
- Gene IDHORVU7Hr1G057140
Barley RTD
Exon Structure of HORVU7Hr1G057140.11
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244648021 | + |
| chr7H | 2 | 244649011 | 244648793 | + |
| chr7H | 3 | 244649246 | 244649157 | + |
| chr7H | 4 | 244649454 | 244649354 | + |
| chr7H | 5 | 244649654 | 244649541 | + |
| chr7H | 6 | 244649826 | 244649745 | + |
| chr7H | 7 | 244649975 | 244649908 | + |
| chr7H | 8 | 244650345 | 244650076 | + |
| chr7H | 9 | 244651074 | 244650741 | + |
| chr7H | 10 | 244651289 | 244651173 | + |
| chr7H | 11 | 244652881 | 244651667 | + |
| chr7H | 12 | 244653452 | 244653145 | + |
| chr7H | 13 | 244653634 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +3 | 0.0 | 922 | 481/727 (66%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+3 | 0.0 | 331 | 273/785 (35%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.2.p | +3 | 0.0 | 1048 | 535/728 (73%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3140 bp)
>HORVU7Hr1G057140.11 3140 150831_barley_pseudomolecules AGTCCTCTCCCTTTCCCTTTCCCTTTCCCTTCCCCTCCTCCTCCTCCTATTCTTCTTCTC GGCACCAACAAGGAGGAGCAGAAGAGGAGAGGGGGCGACACAGTCTTGCCACTAGCTGCA TTTCTCTCCTCTCGCATTGGTCGTCTTCTAGTTCCACCGTCCACCAGGGTGCGCAGGGCT GAGAAGGGCGATGGGGGCGGGGGAGGAGGATGCGGCGGCGGCATGGGAGAAGGTGGAGGC CAAGGAGGAGAGGATCATGGTGTCCGTGCGGGTGCGGCCCCTGAACGGCAGGGAGTCCGG CGACAGCTCCGACTGGGAGTGCATTAGCCCCACCACCGTCATGTTCCGGAGTACCGTTCC TGACCGCGCCATGTTCCCCACCGCCTACACCTATGACAGGGTGTTTGGCCCCAATTGCTC TACCAGACAGGTCTACGAGGAAGGAGCAAAAGAAGTTGCTCTATCAGTTGTCAGTGGAAT CAACTCAAGCATATTTGCGTATGGGCAAACAAGCAGCGGAAAGACTTACACAATGACTGG AATTACTGAGTACAGTGTGATGGACATTTATGACTACATAGAGAAGCACCCTGAAAGAGA ATTCATGCTGAAATTCTCAGCAATAGAGATATATAATGAAGCTGTGAGGGATCTTCTGAG CCATGATACGACACCTCTTAGACTGCTTGACGATCCTGAGAAAGGGACTACTGTTGAAAA GCTTACCGAGGAAACATTGAGGGACAAGGACCATCTTAGGGATCTTCTTGGAATGTGTGA AGCTCAAAGAGAGATTGGAGAAACGGCTTTGAACGAAGCGAGTTCTAGGTCCCACCAAAT ACTCAGGCTGACAATCGAAAGTTCTGTTAAGCAGTATTTAGGAAGAAGCAAATCGAGCAC CCTGGTGTCTTGTGTGGTACGGAATGTCTTTCTATATTCATGATTATTTGGTACTAGCAT GTTTCCATCATCTCCGAGGTTCTTCTTCTGGACAGAACTTTGTTGACCTAGCTGGAAGTG AGCGAGCATCTCAGACTGCTTCAGCTGGTATGAGGTTAAAAGAAGGTAGTCATATTAATC GAAGTCTGCTAACACTGGGAAAGGTTGTTCGCCAACTCAGCAAGGGAAGAAATGGTCATA TCCCTTATAGAGATTCAAAGCTGACACGCATATTACAGTCCTCTTTGGGAGGCAATGCAA GAACAGCCATTGTCTGCACAATGAGCCCTGCACACACTCATATTGAGCAATCCAGGAACA CACTTCTGTTTGCGACTTGCGCAAAGGAGGTAGTTACAAATGCACAGGTCAATGTAGTGA TGTCTGACAAAGCACTACTGAAGCATCTACAGAGAGAGCTCGCAAGATTAGAAAATGAAC TGAAATTGCCGGAGTCAGCCTCCTGCACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATG CACAGATTAAAAAGCTGGAAAAACAGCTTAGGGAATTGATAGAAGAAAAGGACACCGTTC AGTCTCAACTTAACTGTTTACTGAGAAGTGATGGTGACGACCATGACAATGATCGTGCTG CAAAGCGATGGGATGTCCATAGTCGGTCCTCAGAGTCTCTTGCACGAAATGCATCGGAGG AAGCACTTTCGGTTTCAGACACTTATGGAGGTTCTTATCAAGATCAAGGTCACGCAGTGT TTGATGGATCATATGTCTTCAGTGCTGATCATGATGGCTTGTCATCCCCCAATAAACCAA TGGATCTTCCTCAGCAAACAAGGGTTCGGCAGCCAGTTTCACCTTGGCACCCTACTAGCA ACTATAGCTCTGATGGTGCGGAGTCATATAACATAAAGGAGGTAGCTTTCAGAACTGCAT CTGAGGTATCCGAAGAACATTGTAGGGAAGTGCAATGTATAGAGATACATGAGCATAGAA GAAGCACAAGCCAGGAATTTAACGTATTACTCCATGAGGGCACTAAGCTCCACATACCTG AAGTAGAGGACATCTCTAGAGACGCAGTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGA GCATAACAGAAAAAATGGAAGATCATATGAAGATATACGCTAGCAAAGAGGAGCAGCAGG CCGAGATCATAGCAAATGCAGTAGAAGATCCTATTGAAGTGCATCAATGTGAATCTGATG ACTTTGCACACAACTTTGTCAAACTGTACCCATGTGATTCTAACATTTCTCTGGACGTTG GCAAACCTTACCCTCATGAATGTCTTACTGTAAAGAGGTGTATAACGAGCTCCAAGGATA GTGCATTGGCTAGAAGTCAAAGCTGCAGGGCTAGCTTCATGATCATTCCAAATAGTTGGT TTGATGATTCGGAAAACACCAGGCAGACACCACCTGATGAAATCTTCAGGTATCCTCCCA GAAGGCCTGATAAAGTCAGGAGAAGTCTGTACCAAGGAAATGATGATTGCCAAAACAATA ACACTTCAGTAGACCTCTCTGCTGATTCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGG ACACAGGTACCAGTGATGCAGTCAAGGACATGAGCACCAGTGCTGAAGTAGTCAAGGACA TGAGTACCAATGATGAAGTAGTTAAGGCCATGAGCACCAGTGATGAAGTAGTCAAGGACA TGAGCACCAGTGATGAAGTAGGCAAGGAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTT GTATGGGTGACATCAGTTGTGTCACAGAGCTGGAACAGAAGACAGCAAAACACCATGAGG ACCAACCCGAGGAACATGAGGCAGAGCAGACTGTTAGAGATGAGTGTACAGCAGTTAAAA CTGTCAAAGATGTTGGCATAGACGCAGTCCCGAGTACCGCCGAGTCTCCTTCGTGCTGGC CTATTGATTTTGCAAATAGGCAGCGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGT CCCTAGTACACAGGACCTACTTCTTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCT ACATGGAAGTGGAGCACAGGAGACTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCG CAGGAGGCGAGCTTAACTCCGCAATCGCGTCCAGCTTGAAGAATCTGAAACGTGAGAGGG ACATGTTCTACAAGCAGATG