- Transcript HORVU7Hr1G041090.25
- Transcript IDHORVU7Hr1G041090.25
- Gene IDHORVU7Hr1G041090
Barley RTD
Exon Structure of HORVU7Hr1G041090.25
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 112662272 | 112661755 | + |
| chr7H | 2 | 112662527 | 112662396 | + |
| chr7H | 3 | 112662915 | 112662700 | + |
| chr7H | 4 | 112665447 | 112665323 | + |
| chr7H | 5 | 112665926 | 112665869 | + |
| chr7H | 6 | 112666487 | 112666039 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g14040.1 | +3 | 7e-170 | 488 | 246/266 (92%) | protein|ThiF family domain containing protein, putative, expressed |
| TAIR PP10 | AT5G37530 @ ARAPORT AT5G37530.2 @ TAIR |
+3 | 2e-127 | 379 | 194/264 (73%) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=456 |
| BRACH PP3 | Bradi1g44307.5.p | +3 | 1e-168 | 482 | 245/266 (92%) | pacid=32793960 transcript=Bradi1g44307.5 locus=Bradi1g44307 ID=Bradi1g44307.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1498 bp)
>HORVU7Hr1G041090.25 1498 150831_barley_pseudomolecules CCTGTTTTAGTTTAATGAGGAAATAACTGAGAGTCCTCCATGCAAACACTGCCTTCAGTT TCATGAAGGAATGATCTAGTAGCATAATCACAAATTACTTGACTAATTCTGGAAACAAAT TGGTCACCAAGGTGGATGTTCCTGATCCCGCTGCATTATAATGATTAATCAACTCAAAGT TACCCTATTCGGTACTTTAAACCAGTTTCTTTAGCGAAATGTTACTTGGCTCAGTCTTCA TCTTGTTAATTAATTTGATACTCCCTCCATCTCATATATCAGACCTTACTACATCCAATA TACAATAAGGTCTTATATTATGGGATGGAGGGAGTATTATGCTTTGTGCATCATTATGAG ATGTTGATAATATTGATCTTTAGGTGTCTCTCCTTGCGGCTTGCGTACGCAGAGGGTTAA GGGTACTTTCTGCAATGGGGGCTGGAGCTCGAGCTGACCCGACCCGAATCCGTGTTGCGG ATTTGAGAGAATCAAGCAATGATCCCCTTTCTCGGGCGGTACGGCATCGGCTGAAGAAGG ATCATGGAATTGAAGGTGGAATACCAGTAGTTTTTTCAATGGAGAAGCCCAAGGCAAAGC TACTTCCCTTTCAAGGTTCGAAAGAAGAGGAAACTCCATCAGATTACCAGATTGTGCCAG GATTCAGGGTTCGCATTATCCCAGTACTGGGAACTATCCCTGCAATATTTGGTCAAGTTA TGGCCTCCTATGTGGTTACTCAGCTTGCCCAGTTTGATTTTCAAACTGAACCAATTGTTA ACCTGGATTTGGATCATTACCGCGTTCTTCACCATCGTCTTCTTGAGCACGAGGAGCTGA TATATGGGTCAGCCGAGCAAGTTTTGGTTGATGCTGAAGAGGTGATGTACATTGTGAAAG AATTGTGGCGTGGCCGCAGTGCTAGGGACCAAAACATGAAGGATACTGGCCGGAAAATGT GGAGATCTGTCAACGAACTGATGCTTGTTCGGTGGGACAAAACGAAGCCCGCTGGTGTGT CAAACTTAATACTTCTCAAGTTCAGTGAGGCGGATGCACATGAATCCACCACGCTTGATC AGCTAAAAGATGAAGAACCTGAATTCTACGCCATGGTTTCACGTGTTCTGAAACGAGCCG AAACGGAGTTTGCTTTATGAGCTGGTCACCGATGTTACTGGATTTCTACGATTGCTATAC CGTCATAAGCCGTGCAATGCTACTGGACTAGTCAGGTAGGTTTCAGTTTTGCATGGTCTG ATCTTGTGTGATAGTGACGAGGAGCAAGTAGATGATGCACACTTCCCTGAATTTTTGTTT TGGCCATAGAACTAGGACTTGTTGGTGATGCTTTGATTTCTCTGGAAGGATCCTCCTGTA ATCGTCTCCCCGGGATTTTTTATGCGTTTGAGATTGTCTCATGTAAACCAAATCAGAGAT TATATTGAGCATACGATATGCGGCATATTCAAATGAATTCTAAGAGATTCGAGCTGTG