- Gene HORVU7Hr1G041090
- Gene IDHORVU7Hr1G041090
- Location chr7H: 112659871 - 112666803
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u51505 | 87.7 | + | + | 6933 | -976 | Containing |
Transcripts from Gene HORVU7Hr1G041090
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU7Hr1G041090.1 | 1788 | gene=HORVU7Hr1G041090 CDS=3-1484 |
| HORVU7Hr1G041090.2 | 1718 | gene=HORVU7Hr1G041090 CDS=3-1448 |
| HORVU7Hr1G041090.3 | 1753 | gene=HORVU7Hr1G041090 CDS=217-1389 |
| HORVU7Hr1G041090.4 | 1812 | gene=HORVU7Hr1G041090 CDS=3-1448 |
| HORVU7Hr1G041090.5 | 310 | gene=HORVU7Hr1G041090 CDS=2-310 |
| HORVU7Hr1G041090.6 | 1599 | gene=HORVU7Hr1G041090 CDS=216-1388 |
| HORVU7Hr1G041090.7 | 1697 | gene=HORVU7Hr1G041090 CDS=259-1392 |
| HORVU7Hr1G041090.8 | 1679 | gene=HORVU7Hr1G041090 CDS=3-1445 |
| HORVU7Hr1G041090.9 | 1709 | gene=HORVU7Hr1G041090 CDS=3-1442 |
| HORVU7Hr1G041090.10 | 1776 | gene=HORVU7Hr1G041090 CDS=3-1436 |
| HORVU7Hr1G041090.11 | 1778 | gene=HORVU7Hr1G041090 CDS=3-1307 |
| HORVU7Hr1G041090.12 | 1627 | gene=HORVU7Hr1G041090 CDS=670-1395 |
| HORVU7Hr1G041090.13 | 1712 | gene=HORVU7Hr1G041090 CDS=188-1324 |
| HORVU7Hr1G041090.14 | 1660 | gene=HORVU7Hr1G041090 CDS=175-1419 |
| HORVU7Hr1G041090.15 | 1660 | gene=HORVU7Hr1G041090 CDS=3-1322 |
| HORVU7Hr1G041090.16 | 1976 | gene=HORVU7Hr1G041090 CDS=1-1416 |
| HORVU7Hr1G041090.17 | 780 | gene=HORVU7Hr1G041090 CDS=1-696 |
| HORVU7Hr1G041090.18 | 454 | gene=HORVU7Hr1G041090 CDS=3-452 |
| HORVU7Hr1G041090.19 | 1512 | gene=HORVU7Hr1G041090 CDS=3-920 |
| HORVU7Hr1G041090.20 | 1543 | gene=HORVU7Hr1G041090 CDS=498-1226 |
| HORVU7Hr1G041090.21 | 297 | gene=HORVU7Hr1G041090 CDS=3-164 |
| HORVU7Hr1G041090.22 | 1262 | gene=HORVU7Hr1G041090 CDS=123-1262 |
| HORVU7Hr1G041090.23 | 1255 | gene=HORVU7Hr1G041090 CDS=215-1255 |
| HORVU7Hr1G041090.24 | 1043 | gene=HORVU7Hr1G041090 CDS=51-1043 |
| HORVU7Hr1G041090.25 | 1498 | gene=HORVU7Hr1G041090 CDS=435-1160 |
| HORVU7Hr1G041090.26 | 334 | gene=HORVU7Hr1G041090 CDS=212-328 |
| HORVU7Hr1G041090.27 | 906 | gene=HORVU7Hr1G041090 CDS=336-542 |
Exon Structure of HORVU7Hr1G041090
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g14040.1 | +1 | 0.0 | 704 | 389/433 (90%) | protein|ThiF family domain containing protein, putative, expressed |
| TAIR PP10 | AT5G37530 @ ARAPORT AT5G37530.1 @ TAIR |
+1 | 0.0 | 553 | 303/391 (77%) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=457 |
| BRACH PP3 | Bradi1g44307.6.p | +1 | 0.0 | 714 | 415/466 (89%) | pacid=32793958 transcript=Bradi1g44307.6 locus=Bradi1g44307 ID=Bradi1g44307.6.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons