- Transcript HORVU7Hr1G041090.19
- Transcript IDHORVU7Hr1G041090.19
- Gene IDHORVU7Hr1G041090
Barley RTD
Exon Structure of HORVU7Hr1G041090.19
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 112660224 | 112660190 | + |
| chr7H | 2 | 112660580 | 112660502 | + |
| chr7H | 3 | 112661070 | 112660982 | + |
| chr7H | 4 | 112661592 | 112661380 | + |
| chr7H | 5 | 112662272 | 112662138 | + |
| chr7H | 6 | 112662527 | 112662396 | + |
| chr7H | 7 | 112662917 | 112662700 | + |
| chr7H | 8 | 112665447 | 112665323 | + |
| chr7H | 9 | 112665926 | 112665869 | + |
| chr7H | 10 | 112666466 | 112666039 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g14040.1 | +3 | 4e-152 | 442 | 240/255 (94%) | protein|ThiF family domain containing protein, putative, expressed |
| TAIR PP10 | AT5G37530 @ ARAPORT AT5G37530.1 @ TAIR |
+3 | 1e-138 | 383 | 205/251 (82%) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=457 |
| BRACH PP3 | Bradi1g44307.5.p | +3 | 4e-177 | 503 | 277/296 (94%) | pacid=32793960 transcript=Bradi1g44307.5 locus=Bradi1g44307 ID=Bradi1g44307.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1512 bp)
>HORVU7Hr1G041090.19 1512 150831_barley_pseudomolecules GCGCAAGCTGTTGGAATCCAATGGCGGTGCTGGTGGCAGTACTGGACCGGGAGCACGTCT GCATGCTAGCTCGGATCTTCTCTCTGATGAAGTTGTCGCTGAGCAGCTTACAAGTCATTG GTCTTGGAGGAGTTGGCAGTCATGCTGCTTCCATGCTCCTCAGATCTGGGGTTGGCAGGT TGCTCCTAGTAGATTTTGATCAGGTCTCACTCTCATCACTAAATCGGCATGCTGTGGCAA CCAGAGAGGACGTGGGGACCCCAAAAGCATCATGCCTCAAGAAGCATTTCTCATTGATAT ATCCAGAGTGTCAAATAGAAGCAAGAGTGCAGTTGTATGATTCATCAGCTGAGGACGAAA TTCTTTCTGGACAGCCAGATTTTGTTCTTGATTGCATAGATAACATTGATACTAAGGTGT CTCTCCTTGCGGCTTGCGTACGCAGAGGGTTAAGGGTACTTTCTGCAATGGGGGCTGGAG CTCGAGCTGACCCGACCCGAATCCGTGTTGCGGATTTGAGAGAATCAAGCAATGATCCCC TTTCTCGGGCGGTACGGCATCGGCTGAAGAAGGATCATGGAATTGAAGGTGGAATACCAG TAGTTTTTTCAATGGAGAAGCCCAAGGCAAAGCTACTTCCCTTTCAAGGTTCGAAAGAAG AGGAAACTCCATCAGATTACCAGATTGTGCCAGGATTCAGGGTTCGCATTATCCCAGTAC TGGGAACTATCCCTGCAATATTTGGTCAAGTTATGGCCTCCTATGTGGTTACTCAGCTTG CCCAGTTTGATTTTCAAACTGAACCAATTGTTAACCTGGATTTGGATCATTACCGCGTTC TTCACCATCGTCTTCTTGAGCACGAGGAGCTGATATATGGGTCAGCCGAGCAAGTTTTGG TGTTGATGCTGAAGAGGTGATGTACATTGTGAAAGAATTGTGGCGTGGCCGCAGTGCTAG GGACCAAAACATGAAGGATACTGGCCGGAAAATGTGGAGATCTGTCAACGAACTGATGCT TGTTCGGTGGGACAAAACGAAGCCCGCTGGTGTGTCAAACTTAATACTTCTCAAGTTCAG TGAGGCGGATGCACATGAATCCACCACGCTTGATCAGCTAAAAGATGAAGAACCTGAATT CTACGCCATGGTTTCACGTGTTCTGAAACGAGCCGAAACGGAGTTTGCTTTATGAGCTGG TCACCGATGTTACTGGATTTCTACGATTGCTATACCGTCATAAGCCGTGCAATGCTACTG GACTAGTCAGGTAGGTTTCAGTTTTGCATGGTCTGATCTTGTGTGATAGTGACGAGGAGC AAGTAGATGATGCACACTTCCCTGAATTTTTGTTTTGGCCATAGAACTAGGACTTGTTGG TGATGCTTTGATTTCTCTGGAAGGATCCTCCTGTAATCGTCTCCCCGGGATTTTTTATGC GTTTGAGATTGTCTCATGTAAACCAAATCAGAGATTATATTGAGCATACGATATGCGGCA TATTCAAATGAA