Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G041090.18

ChromosomeExonStartStopDirection
chr7H1112660236112660166+
chr7H2112660580112660502+
chr7H3112661070112660982+
chr7H4112661594112661380+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g14040.1 +3 2e-44 152 87/93 (94%) protein|ThiF family domain containing protein, putative, expressed
TAIR PP10 AT5G37530 @ ARAPORT
AT5G37530.1 @ TAIR		 +3 1e-40 141 81/93 (87%) Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=457
BRACH PP3 Bradi1g44307.5.p +3 2e-67 210 120/129 (93%) pacid=32793960 transcript=Bradi1g44307.5 locus=Bradi1g44307 ID=Bradi1g44307.5.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (454 bp)

>HORVU7Hr1G041090.18 454 150831_barley_pseudomolecules
GGCGAAGCGGAGAGAGGGATACGTGCGCAAGCTGTTGGAATCCAATGGCGGTGCTGGTGG
TACGCACGCTGGCAGTACTGGACCGGGAGCACGTCTGCATGCTAGCTCGGATCTTCTCTC
TGATGAAGTTGTCGCTGAGCAGCTTACAAGTCATTGGTCTTGGAGGAGTTGGCAGTCATG
CTGCTTCCATGCTCCTCAGATCTGGGGTTGGCAGGTTGCTCCTAGTAGATTTTGATCAGG
TCTCACTCTCATCACTAAATCGGCATGCTGTGGCAACCAGAGAGGACGTGGGGACCCCAA
AAGCATCATGCCTCAAGAAGCATTTCTCATTGATATATCCAGAGTGTCAAATAGAAGCAA
GAGTGCAGTTGTATGATTCATCAGCTGAGGACGAAATTCTTTCTGGACAGCCAGATTTTG
TTCTTGATTGCATAGATAACATTGATACTAAGGT