Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G041090.17

ChromosomeExonStartStopDirection
chr7H1112660066112659945+
chr7H2112660236112660166+
chr7H3112660580112660502+
chr7H4112661070112660923+
chr7H5112661739112661380+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g14040.1 +1 3e-72 229 148/175 (85%) protein|ThiF family domain containing protein, putative, expressed
TAIR PP10 AT5G37530 @ ARAPORT
AT5G37530.2 @ TAIR		 +1 7e-56 186 114/135 (84%) Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=456
BRACH PP3 Bradi1g44307.6.p +1 4e-78 244 175/209 (84%) pacid=32793958 transcript=Bradi1g44307.6 locus=Bradi1g44307 ID=Bradi1g44307.6.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (780 bp)

>HORVU7Hr1G041090.17 780 150831_barley_pseudomolecules
GGCGGCTGCGCCGGAGACATGGAGGAGAGGGCGAGGCAGCTGCTCCTCCTCGCCGCCGTC
GCGGGCGCTGGCGCCGTAGTAGGCGGGCTCTCCGTTGCTTCCGTCTTCAGCTTCCTCTCC
AGGGCGAAGCGGAGAGAGGGATACGTGCGCAAGCTGTTGGAATCCAATGGCGGTGCTGGT
GGTACGCACGCTGGCAGTACTGGACCGGGAGCACGTCTGCATGCTAGCTCGGATCTTCTC
TCTGATGAAGTTGTCGCTGAGCAGCTTACAAGGAATATACAATTTTTTGGAGTCCAATCT
CAGAAGAAAGTTACTGAATCTTTTGTTGTAGTCATTGGTCTTGGAGGAGTTGGCAGTCAT
GCTGCTTCCATGCTCCTCAGATCTGGGGTTGGCAGGTTGCTCCTAGTAGATTTTGATCAG
GTCTCACTCTCATCACTAAATCGGCATGCTGTGGCAACCAGAGAGGACGTGGGGACCCCA
AAAGCATCATGCCTCAAGAAGCATTTCTCATTGATATATCCAGAGTGTCAAATAGAAGCA
AGAGTGCAGTTGTATGATTCATCAGCTGAGGACGAAATTCTTTCTGGACAGCCAGATTTT
GTTCTTGATTGCATAGATAACATTGATACTAAGGTAAACAAATATTGCTTAACTAATTCT
GATACCAAATCTGATGTTGATTTTTTTGTTAGATAGTTGGCTTTCAGCATTCCACACATT
TTGCGGTTTTCTTCAGTATTCAGGTGTATGTTTTATTTTTCATGTTGATATGCTCTAAAT