- Transcript HORVU7Hr1G041090.16
- Transcript IDHORVU7Hr1G041090.16
- Gene IDHORVU7Hr1G041090
Barley RTD
Exon Structure of HORVU7Hr1G041090.16
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 112660066 | 112659939 | + |
| chr7H | 2 | 112660236 | 112660166 | + |
| chr7H | 3 | 112660580 | 112660502 | + |
| chr7H | 4 | 112661070 | 112660923 | + |
| chr7H | 5 | 112661592 | 112661380 | + |
| chr7H | 6 | 112662272 | 112662138 | + |
| chr7H | 7 | 112662527 | 112662396 | + |
| chr7H | 8 | 112662915 | 112662700 | + |
| chr7H | 9 | 112665447 | 112665323 | + |
| chr7H | 10 | 112665926 | 112665869 | + |
| chr7H | 11 | 112666224 | 112666039 | + |
| chr7H | 12 | 112666803 | 112666319 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g14040.1 | +1 | 0.0 | 704 | 389/433 (90%) | protein|ThiF family domain containing protein, putative, expressed |
| TAIR PP10 | AT5G37530 @ ARAPORT AT5G37530.1 @ TAIR |
+1 | 0.0 | 553 | 303/391 (77%) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=457 |
| BRACH PP3 | Bradi1g44307.6.p | +1 | 0.0 | 714 | 415/466 (89%) | pacid=32793958 transcript=Bradi1g44307.6 locus=Bradi1g44307 ID=Bradi1g44307.6.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1976 bp)
>HORVU7Hr1G041090.16 1976 150831_barley_pseudomolecules GTTCTAGGCGGCTGCGCCGGAGACATGGAGGAGAGGGCGAGGCAGCTGCTCCTCCTCGCC GCCGTCGCGGGCGCTGGCGCCGTAGTAGGCGGGCTCTCCGTTGCTTCCGTCTTCAGCTTC CTCTCCAGGGCGAAGCGGAGAGAGGGATACGTGCGCAAGCTGTTGGAATCCAATGGCGGT GCTGGTGGTACGCACGCTGGCAGTACTGGACCGGGAGCACGTCTGCATGCTAGCTCGGAT CTTCTCTCTGATGAAGTTGTCGCTGAGCAGCTTACAAGGAATATACAATTTTTTGGAGTC CAATCTCAGAAGAAAGTTACTGAATCTTTTGTTGTAGTCATTGGTCTTGGAGGAGTTGGC AGTCATGCTGCTTCCATGCTCCTCAGATCTGGGGTTGGCAGGTTGCTCCTAGTAGATTTT GATCAGGTCTCACTCTCATCACTAAATCGGCATGCTGTGGCAACCAGAGAGGACGTGGGG ACCCCAAAAGCATCATGCCTCAAGAAGCATTTCTCATTGATATATCCAGAGTGTCAAATA GAAGCAAGAGTGCAGTTGTATGATTCATCAGCTGAGGACGAAATTCTTTCTGGACAGCCA GATTTTGTTCTTGATTGCATAGATAACATTGATACTAAGGTGTCTCTCCTTGCGGCTTGC GTACGCAGAGGGTTAAGGGTACTTTCTGCAATGGGGGCTGGAGCTCGAGCTGACCCGACC CGAATCCGTGTTGCGGATTTGAGAGAATCAAGCAATGATCCCCTTTCTCGGGCGGTACGG CATCGGCTGAAGAAGGATCATGGAATTGAAGGTGGAATACCAGTAGTTTTTTCAATGGAG AAGCCCAAGGCAAAGCTACTTCCCTTTCAAGGTTCGAAAGAAGAGGAAACTCCATCAGAT TACCAGATTGTGCCAGGATTCAGGGTTCGCATTATCCCAGTACTGGGAACTATCCCTGCA ATATTTGGTCAAGTTATGGCCTCCTATGTGGTTACTCAGCTTGCCCAGTTTGATTTTCAA ACTGAACCAATTGTTAACCTGGATTTGGATCATTACCGCGTTCTTCACCATCGTCTTCTT GAGCACGAGGAGCTGATATATGGGTCAGCCGAGCAAGTTTTGGTTGATGCTGAAGAGGTG ATGTACATTGTGAAAGAATTGTGGCGTGGCCGCAGTGCTAGGGACCAAAACATGAAGGAT ACTGGCCGGAAAATGTGGAGATCTGTCAACGAACTGATGCTTGTTCGGTGGGACAAAACG AAGCCCGCTGGTGTGTCAAACTTAATACTTCTCAAGTTCAGTGAGGCGGATGCACATGAA TCCACCACGCTTGATCAGCTAAAAGATGAAGAACCTGAATTCTACGCCATGGTTTCACGT GTTCTGAAACGAGCCGAAACGGAGTTTGCTTTATGAGCTGGTCACCGATGTTACTGGATT TCTACGATTGCTATACCGTCATAAGCCGTGCAATGCTACTGGACTAGTCAGAACTAGGAC TTGTTGGTGATGCTTTGATTTCTCTGGAAGGATCCTCCTGTAATCGTCTCCCCGGGATTT TTTATGCGTTTGAGATTGTCTCATGTAAACCAAATCAGAGATTATATTGAGCATACGATA TGCGGCATATTCAAATGAATTCTAAGAGATTCGAGCTGTGGATGTCCAACAGGCTCTTGC AATCAACGCCAGACGCTGCCGGGTTCGCCAAGGCGGCCCGTTGTCCTGTTCAGTAGTAGT ACTACTTTTCAAGGCCATATTCCTTTATATCCTGTCGATGGAAAAAGCCAAGACAAAGAC ATATCCCCTTTCACTCTGCAGCCTTTTCCAAGACAAAGCCATGTGTGTTTAATGTAGTCA ATGTGGTCCTTTTCACTCCCACTTTGAGACATATGGATCCATCGTTCCTTTCCAAAAATG TAGCATTAGAATTGTGCTGACACCTGACAAGTATAGTACCGTTGATATGCAGGCCT