Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G028240.8

ChromosomeExonStartStopDirection
chr7H15093290750932604-
chr7H25093397450933808-
chr7H35093462750934396-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g07760.1 +1 2e-44 126 86/118 (73%) protein|sulfiredoxin-1, putative, expressed
TAIR PP10 AT1G31170 @ ARAPORT
AT1G31170.4 @ TAIR		 +1 2e-33 90 41/53 (77%) Symbols: SRX | sulfiredoxin | chr1:11133521-11134686 FORWARD LENGTH=198
BRACH PP3 Bradi1g47970.2.p +1 5e-53 155 94/113 (83%) pacid=32792060 transcript=Bradi1g47970.2 locus=Bradi1g47970 ID=Bradi1g47970.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (703 bp)

>HORVU7Hr1G028240.8 703 150831_barley_pseudomolecules
GCAGATCGATGCGACGCTCCGACACGTTAAGCAGAGCAGTAAACGGAAGCAGCAGCGGCA
GCACGAGCGCGACCACGAATGGCGTCTACCTCGAGCTTGGATTTGGGAAAGATCGTGCCG
CCGGCCGGCTTCCTCCTCCACCGCCGCACCGCCGTTCCCAGCGCCCCTGTTCTCCGGGGG
AGGAGCACGAGCGGGCAGTGCGGCCTCGCTGTCTCGGCCTCGTCTTCCAATGGTGCAGCT
GGCCTCTTCCCATTGAGCGACACGGAGAAGAAAGGCCCTGTGGTGATGGAGATCCCGCTG
GAAGATATCCGTAGGCCGCTAATGCGAACGCGTGCTAACGATCCTGAGAAGGTGCAGGAG
CTCATGGACAGCATCCGTGTCATCGGCCTCCAAGTACCTATCGACGTGCTGGAAGTCGAC
GGAGTCTACTACGGTAGTTTTGTTCAGATCTCAATTGGTCATTCCCCACTCCAAAAGCTA
TACCCATTTCCCTCTTCCTGAATATGCCTGCACATGATCCTCAGGATTCTCTGGATGCCA
TCGATACGAGGCTCACCAGCGCCTAGGACTCCCAACCATCCGCTGCAAAGTCCGCCGAGG
GACCAAAGAAACACTGCGGTGAGCCGATATTCCTTGAGTTTTGTTGGATGGTCAGTTGTC
AGTTCGGTTTATCTGCACAGGATCTTGAATCTTCTATTTCAGG