Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u50476	84.0	-	-	2487	-475	Containing

Transcripts from Gene HORVU7Hr1G028240

Transcript	Length(bp)	Description
HORVU7Hr1G028240.1	1009	gene=HORVU7Hr1G028240 CDS=3-428
HORVU7Hr1G028240.2	912	gene=HORVU7Hr1G028240 CDS=68-532
HORVU7Hr1G028240.3	874	gene=HORVU7Hr1G028240 CDS=55-513
HORVU7Hr1G028240.4	719	gene=HORVU7Hr1G028240 CDS=2-475
HORVU7Hr1G028240.5	385	gene=HORVU7Hr1G028240 CDS=1-384
HORVU7Hr1G028240.6	333	gene=HORVU7Hr1G028240 CDS=1-333
HORVU7Hr1G028240.7	321	gene=HORVU7Hr1G028240 CDS=1-321
HORVU7Hr1G028240.8	703	gene=HORVU7Hr1G028240 CDS=79-501

Exon Structure of HORVU7Hr1G028240

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os06g07760.1	+3	3e-48	130	88/120 (73%)	protein|sulfiredoxin-1, putative, expressed
TAIR PP10	AT1G31170 @ ARAPORT AT1G31170.2 @ TAIR	+3	2e-34	89	41/53 (77%)	Symbols: ATSRX, SRX | sulfiredoxin | chr1:11133521-11134228 FORWARD LENGTH=125
BRACH PP3	Bradi1g47970.2.p	+3	8e-56	156	94/113 (83%)	pacid=32792060 transcript=Bradi1g47970.2 locus=Bradi1g47970 ID=Bradi1g47970.2.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons