- Transcript HORVU7Hr1G028240.6
- Transcript IDHORVU7Hr1G028240.6
- Gene IDHORVU7Hr1G028240
Barley RTD
Exon Structure of HORVU7Hr1G028240.6
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 50932604 | 50932589 | - |
| chr7H | 2 | 50932782 | 50932689 | - |
| chr7H | 3 | 50932907 | 50932874 | - |
| chr7H | 4 | 50933974 | 50933808 | - |
| chr7H | 5 | 50934241 | 50934220 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g07760.1 | +1 | 8e-66 | 196 | 95/111 (86%) | protein|sulfiredoxin-1, putative, expressed |
| TAIR PP10 | AT1G31170 @ ARAPORT AT1G31170.2 @ TAIR |
+1 | 4e-52 | 160 | 72/88 (82%) | Symbols: ATSRX, SRX | sulfiredoxin | chr1:11133521-11134228 FORWARD LENGTH=125 |
| BRACH PP3 | Bradi1g47970.2.p | +1 | 2e-67 | 200 | 97/103 (94%) | pacid=32792060 transcript=Bradi1g47970.2 locus=Bradi1g47970 ID=Bradi1g47970.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (333 bp)
>HORVU7Hr1G028240.6 333 150831_barley_pseudomolecules AGATTTGATTCCAACTTTGCTAGTGCAGCTGGCCTCTTCCCATTGAGCGACACGGAGAAG AAAGGCCCTGTGGTGATGGAGATCCCGCTGGAAGATATCCGTAGGCCGCTAATGCGAACG CGTGCTAACGATCCTGAGAAGGTGCAGGAGCTCATGGACAGCATCCGTGTCATCGGCCTC CAAGTACCTATCGACGTGCTGGAAGTCGACGGAGTCTACTACGGATTCTCTGGATGCCAT CGATACGAGGCTCACCAGCGCCTAGGACTCCCAACCATCCGCTGCAAAGTCCGCCGAGGG ACCAAAGAAACACTGCGGCACCATATGCGATGA