Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G028240.5

ChromosomeExonStartStopDirection
chr7H15093262650932547-
chr7H25093278250932689-
chr7H35093290750932874-
chr7H45093397450933808-
chr7H55093425450934245-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g07760.1 +1 2e-62 188 91/101 (90%) protein|sulfiredoxin-1, putative, expressed
TAIR PP10 AT1G31170 @ ARAPORT
AT1G31170.2 @ TAIR		 +1 9e-49 152 69/84 (82%) Symbols: ATSRX, SRX | sulfiredoxin | chr1:11133521-11134228 FORWARD LENGTH=125
BRACH PP3 Bradi1g47970.2.p +1 2e-64 193 93/101 (92%) pacid=32792060 transcript=Bradi1g47970.2 locus=Bradi1g47970 ID=Bradi1g47970.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (385 bp)

>HORVU7Hr1G028240.5 385 150831_barley_pseudomolecules
GTTGAATCCGGTGCAGCTGGCCTCTTCCCATTGAGCGACACGGAGAAGAAAGGCCCTGTG
GTGATGGAGATCCCGCTGGAAGATATCCGTAGGCCGCTAATGCGAACGCGTGCTAACGAT
CCTGAGAAGGTGCAGGAGCTCATGGACAGCATCCGTGTCATCGGCCTCCAAGTACCTATC
GACGTGCTGGAAGTCGACGGAGTCTACTACGGATTCTCTGGATGCCATCGATACGAGGCT
CACCAGCGCCTAGGACTCCCAACCATCCGCTGCAAAGTCCGCCGAGGGACCAAAGAAACA
CTGCGGATCTTGAATCTTCTATTTCAGGCACCATATGCGATGAATCGGTGGTTAGCGATG
AATGGACAATCCATGGATTGCTTCA