Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G028240.4

ChromosomeExonStartStopDirection
chr7H15093278250932441-
chr7H25093290750932874-
chr7H35093397450933808-
chr7H45093457150934396-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g07760.1 +2 1e-64 198 119/151 (79%) protein|sulfiredoxin-1, putative, expressed
TAIR PP10 AT1G31170 @ ARAPORT
AT1G31170.4 @ TAIR		 +2 3e-47 155 70/87 (80%) Symbols: SRX | sulfiredoxin | chr1:11133521-11134686 FORWARD LENGTH=198
BRACH PP3 Bradi1g47970.2.p +2 5e-74 222 125/144 (87%) pacid=32792060 transcript=Bradi1g47970.2 locus=Bradi1g47970 ID=Bradi1g47970.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (719 bp)

>HORVU7Hr1G028240.4 719 150831_barley_pseudomolecules
GGCAGCACGAGCGCGACCACGAATGGCGTCTACCTCGAGCTTGGATTTGGGAAAGATCGT
GCCGCCGGCCGGCTTCCTCCTCCACCGCCGCACCGCCGTTCCCAGCGCCCCTGTTCTCCG
GGGGAGGAGCACGAGCGGGCAGTGCGGCCTCGCTGTCTCGGCCTCGTCTTCCAATGGTGC
AGCTGGCCTCTTCCCATTGAGCGACACGGAGAAGAAAGGCCCTGTGGTGATGGAGATCCC
GCTGGAAGATATCCGTAGGCCGCTAATGCGAACGCGTGCTAACGATCCTGAGAAGGTGCA
GGAGCTCATGGACAGCATCCGTGTCATCGGCCTCCAAGTACCTATCGACGTGCTGGAAGT
CGACGGAGTCTACTACGGATTCTCTGGATGCCATCGATACGAGGCTCACCAGCGCCTAGG
ACTCCCAACCATCCGCTGCAAAGTCCGCCGAGGGACCAAAGAAACACTGCGGTGAGCCGA
TATTCCTTGAGTTTTGTTGGATGGTCAGTTGTCAGTTCGGTTTATCTGCACAGGATCTTG
AATCTTCTATTTCAGGCACCATATGCGATGAATCGGTGGTTAGCGATGAATGGACAATCC
ATGGATTGCTTCAGCCAGGAAGTGTCGTCTGTTATGTCTAGTGCTAAAAAAAACTTTCTC
CTCCTGTAATCATCTATACGTGTAAATGTTACCCAATCCAATGTATAAAATAGCACAAT