Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G028240.3

ChromosomeExonStartStopDirection
chr7H15093260450932228-
chr7H25093278350932689-
chr7H35093290850932875-
chr7H45093397450933815-
chr7H55093460350934396-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g07760.1 +1 8e-63 196 120/154 (78%) protein|sulfiredoxin-1, putative, expressed
TAIR PP10 AT1G31170 @ ARAPORT
AT1G31170.3 @ TAIR		 +1 7e-48 155 70/86 (81%) Symbols: ATSRX, SRX | sulfiredoxin | chr1:11133521-11134228 FORWARD LENGTH=123
BRACH PP3 Bradi1g47970.2.p +1 1e-73 223 128/149 (86%) pacid=32792060 transcript=Bradi1g47970.2 locus=Bradi1g47970 ID=Bradi1g47970.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (874 bp)

>HORVU7Hr1G028240.3 874 150831_barley_pseudomolecules
CGTTAAGCAGAGCAGTAAACGGAAGCAGCAGCGGCAGCACGAGCGCGACCACGAATGGCG
TCTACCTCGAGCTTGGATTTGGGAAAGATCGTGCCGCCGGCCGGCTTCCTCCTCCACCGC
CGCACCGCCGTTCCCAGCGCCCCTGTTCTCCGGGGGAGGAGCACGAGCGGGCAGTGCGGC
CTCGCTGTCTCGGCCTCGTCTTCCAATGGTGCAGCTGGCCTCTTCCCATTGAGCGACACG
GAGAAGAAAGGCCCTGTGGTGATGGAGATCCCGCTGGAAGATATCCGTAGGCCGCTAATG
CGAACGCGTGCTAACGATCCTGAGAAGGTGCAGGAGCTCATGGACAGCATCCGTGTCATC
GGCCTCCAGATCGACGTGCTGGAAGTCGACGGAGTCTACTACGGATTCTCTGGATGCCAT
CGATACGAGGCTCACCAGCGCCTAGGACTCCCAACCATCCGCTGCAAAGTCCGCCGAGGG
ACCAAAGAAACACTGCGGCACCATATGCGATGAATCGGTGGTTAGCGATGAATGGACAAT
CCATGGATTGCTTCAGCCAGGAAGTGTCGTCTGTTATGTCTAGTGCTAAAAAAAACTTTC
TCCTCCTGTAATCATCTATACGTGTAAATGTTACCCAATCCAATGTATAAAATAGCACAA
TTCAGCTGGCGCTTCTGCTCCTTCTGTTGCATACAGTAATCTCTACAGCTCTGCTTGGGC
AAGAATTCAACTGAAGGTTCAGGCTGGAGTGCAGGGTCTAAACTCTCAGAAATGCAGTGC
CCCCTGAAGCTTCATTAGCAAATTCAGGGCCATTCGGGGTGCGGTTTTTTCCTTCTCATA
TGCACTGTGAATTGACTGGTTACTGTGAAAGTTG