Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G028240.2

ChromosomeExonStartStopDirection
chr7H15093260450932209-
chr7H25093278250932689-
chr7H35093290750932874-
chr7H45093397450933808-
chr7H55093461650934396-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g07760.1 +2 3e-66 205 122/154 (79%) protein|sulfiredoxin-1, putative, expressed
TAIR PP10 AT1G31170 @ ARAPORT
AT1G31170.2 @ TAIR		 +2 4e-49 159 72/88 (82%) Symbols: ATSRX, SRX | sulfiredoxin | chr1:11133521-11134228 FORWARD LENGTH=125
BRACH PP3 Bradi1g47970.2.p +2 6e-77 232 130/149 (87%) pacid=32792060 transcript=Bradi1g47970.2 locus=Bradi1g47970 ID=Bradi1g47970.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (912 bp)

>HORVU7Hr1G028240.2 912 150831_barley_pseudomolecules
CGACGCTCCGACACGTTAAGCAGAGCAGTAAACGGAAGCAGCAGCGGCAGCACGAGCGCG
ACCACGAATGGCGTCTACCTCGAGCTTGGATTTGGGAAAGATCGTGCCGCCGGCCGGCTT
CCTCCTCCACCGCCGCACCGCCGTTCCCAGCGCCCCTGTTCTCCGGGGGAGGAGCACGAG
CGGGCAGTGCGGCCTCGCTGTCTCGGCCTCGTCTTCCAATGGTGCAGCTGGCCTCTTCCC
ATTGAGCGACACGGAGAAGAAAGGCCCTGTGGTGATGGAGATCCCGCTGGAAGATATCCG
TAGGCCGCTAATGCGAACGCGTGCTAACGATCCTGAGAAGGTGCAGGAGCTCATGGACAG
CATCCGTGTCATCGGCCTCCAAGTACCTATCGACGTGCTGGAAGTCGACGGAGTCTACTA
CGGATTCTCTGGATGCCATCGATACGAGGCTCACCAGCGCCTAGGACTCCCAACCATCCG
CTGCAAAGTCCGCCGAGGGACCAAAGAAACACTGCGGCACCATATGCGATGAATCGGTGG
TTAGCGATGAATGGACAATCCATGGATTGCTTCAGCCAGGAAGTGTCGTCTGTTATGTCT
AGTGCTAAAAAAAACTTTCTCCTCCTGTAATCATCTATACGTGTAAATGTTACCCAATCC
AATGTATAAAATAGCACAATTCAGCTGGCGCTTCTGCTCCTTCTGTTGCATACAGTAATC
TCTACAGCTCTGCTTGGGCAAGAATTCAACTGAAGGTTCAGGCTGGAGTGCAGGGTCTAA
ACTCTCAGAAATGCAGTGCCCCCTGAAGCTTCATTAGCAAATTCAGGGCCATTCGGGGTG
CGGTTTTTTCCTTCTCATATGCACTGTGAATTGACTGGTTACTGTGAAAGTTGCAATATC
TGAAACTTTGAG