- Transcript HORVU7Hr1G028240.1
- Transcript IDHORVU7Hr1G028240.1
- Gene IDHORVU7Hr1G028240
Barley RTD
Exon Structure of HORVU7Hr1G028240.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 50932604 | 50932141 | - |
| chr7H | 2 | 50932907 | 50932689 | - |
| chr7H | 3 | 50933974 | 50933808 | - |
| chr7H | 4 | 50934554 | 50934396 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g07760.1 | +3 | 3e-48 | 130 | 88/120 (73%) | protein|sulfiredoxin-1, putative, expressed |
| TAIR PP10 | AT1G31170 @ ARAPORT AT1G31170.2 @ TAIR |
+3 | 2e-34 | 89 | 41/53 (77%) | Symbols: ATSRX, SRX | sulfiredoxin | chr1:11133521-11134228 FORWARD LENGTH=125 |
| BRACH PP3 | Bradi1g47970.2.p | +3 | 8e-56 | 156 | 94/113 (83%) | pacid=32792060 transcript=Bradi1g47970.2 locus=Bradi1g47970 ID=Bradi1g47970.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1009 bp)
>HORVU7Hr1G028240.1 1009 150831_barley_pseudomolecules CACGAATGGCGTCTACCTCGAGCTTGGATTTGGGAAAGATCGTGCCGCCGGCCGGCTTCC TCCTCCACCGCCGCACCGCCGTTCCCAGCGCCCCTGTTCTCCGGGGGAGGAGCACGAGCG GGCAGTGCGGCCTCGCTGTCTCGGCCTCGTCTTCCAATGGTGCAGCTGGCCTCTTCCCAT TGAGCGACACGGAGAAGAAAGGCCCTGTGGTGATGGAGATCCCGCTGGAAGATATCCGTA GGCCGCTAATGCGAACGCGTGCTAACGATCCTGAGAAGGTGCAGGAGCTCATGGACAGCA TCCGTGTCATCGGCCTCCAAGTACCTATCGACGTGCTGGAAGTCGACGGAGTCTACTACG GTAGTTTTGTTCAGATCTCAATTGGTCATTCCCCACTCCAAAAGCTATACCCATTTCCCT CTTCCTGAATATGCCTGCACATGATCCTCAGGATTCTCTGGATGCCATCGATACGAGGCT CACCAGCGCCTAGGACTCCCAACCATCCGCTGCAAAGTCCGCCGAGGGACCAAAGAAACA CTGCGGCACCATATGCGATGAATCGGTGGTTAGCGATGAATGGACAATCCATGGATTGCT TCAGCCAGGAAGTGTCGTCTGTTATGTCTAGTGCTAAAAAAAACTTTCTCCTCCTGTAAT CATCTATACGTGTAAATGTTACCCAATCCAATGTATAAAATAGCACAATTCAGCTGGCGC TTCTGCTCCTTCTGTTGCATACAGTAATCTCTACAGCTCTGCTTGGGCAAGAATTCAACT GAAGGTTCAGGCTGGAGTGCAGGGTCTAAACTCTCAGAAATGCAGTGCCCCCTGAAGCTT CATTAGCAAATTCAGGGCCATTCGGGGTGCGGTTTTTTCCTTCTCATATGCACTGTGAAT TGACTGGTTACTGTGAAAGTTGCAATATCTGAAACTTTGAGATCGTCATCCTCAGAAAAC AGTGCAGTCTCTCTATTCACTAGATTCTGAAGATAAAATGTTTTCAGAA