- Transcript HORVU6Hr1G085120.53
- Transcript IDHORVU6Hr1G085120.53
- Gene IDHORVU6Hr1G085120
Barley RTD
Exon Structure of HORVU6Hr1G085120.53
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 557776140 | 557775769 | - |
| chr6H | 2 | 557776874 | 557776813 | - |
| chr6H | 3 | 557777077 | 557777014 | - |
| chr6H | 4 | 557777826 | 557777334 | - |
| chr6H | 5 | 557778218 | 557777898 | - |
| chr6H | 6 | 557778541 | 557778435 | - |
| chr6H | 7 | 557781982 | 557781883 | - |
| chr6H | 8 | 557782102 | 557782073 | - |
| chr6H | 9 | 557782889 | 557782773 | - |
| chr6H | 10 | 557783122 | 557782999 | - |
| chr6H | 11 | 557783417 | 557783356 | - |
| chr6H | 12 | 557783535 | 557783498 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g34130.1 | +3 | 0.0 | 561 | 271/350 (77%) | protein|GRAM domain containing protein, expressed |
| TAIR PP10 | AT3G59660 @ ARAPORT AT3G59660.1 @ TAIR |
+3 | 4e-139 | 418 | 204/351 (58%) | Symbols: | C2 domain-containing protein / GRAM domain-containing protein | chr3:22034426-22038484 REVERSE LENGTH=594 |
| BRACH PP3 | Bradi4g35301.1.p | +3 | 0.0 | 572 | 278/350 (79%) | pacid=32787900 transcript=Bradi4g35301.1 locus=Bradi4g35301 ID=Bradi4g35301.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1890 bp)
>HORVU6Hr1G085120.53 1890 150831_barley_pseudomolecules CTGAGAAGCAGAGTGGACCAGTTTGGTATACACTTGACTTTATGTATTGTTAGGTTTGTC TCCATATCAAGGCAATCAGGGTTAATGAGAGTTCCTCCAGGGCTCTAAACAACTCTGCCG AGGCTGATGCTCGTAAAAGGATGTCCTTAGACAAAGAAGGCCCTATTGTCGTTCACCAAA AGCCAGGTCATTTACAGACAATTTTTGGGCTACCTCCAGATGAGGTTGTTGAACACAGTT ATTCATGTGCACTTGAGAGGTCATTTCTGTATCACGGCCGCATGTATGTGTCTTTATGGC ACATTTGCTTCTATTCGAACATCTTCTCTAAGCAGATTAAGGTTGAGCTCCCTTTGAGAG ATATTGATGAGATAACAAAAAGCCAACTTGCAGTTATTAATCCTGCAATTACGATATTTC TTCGAACGGGAGCTGGAGGACATGGAGTTCCTTCCTTAGGATGCCCTGATGGAAGAGTTA GATATATATTTGCATCGTTTTGGAACAGAAACCACACAATTAGAGCACTGGAACAAGCTG TGAAGAACTTCCATACCATGATAGAGGCTGAGAAACAGGAACGTGCTCGATCTGCATTAC GTGCACTCAGTGGCTCAAGAAAAAATAGCATGGAGATAGATGTTCCAGAAGATTGTGCTG ATTTAATAGGTCTATTACAACCTTTTGTCAAAGAAGAAGTTCTAGTCTCTGTATTTGATG TAATGATAACTAACTGTATCTTCCATGATTTTGCAATTGATAATACAACTGATCTTCAAC TCATCTCATCTCAGGGAACATTTCCGTGTACTGCAGACCAGTTTTTCAATAATCTTATAA GTGATGACTCAACTTACACAACAGAATATCGAACAGCTCGTCAGGATAAAGATATCAAAC TGGGCCAGTGGCACCTTGCAGACGAGTATGATGGTCAGGTGAGAGAACTTAACTGTAAAT CCATGTGCCACAGTCCGATGTGCCCTCCATATTCAGCAATTACAGAGTGGCAGCATACGG TTCTTTCAGCTAACAAAACCGATCTGGTATGTTTTTAATACAAAACTGAACATCCCATTA TGACGGCTAACATTTCTTGCGTCATAGTATTACATTATGTTATACTTCCTCCGTTCCTAA ATATAAGACCTTTTAGATATTGCACTATGAACTATATACGGATGTACATAGGTATATTTT AAAATATAGATTCACTCATTTTGCTCCGTATGTAGTCTCCTAACGTAATCTCTAAAAGGT CTTATATTTTGAAACGGAGGGAGTATATTACTACTACAGATCATAAATAAATCTGATTGC TAATTTTTTATCTTTTAGGTATTCGAGACTGTACAACAAGTACATGATGTTCCCTTTGGT TCCTATTTTGAGATACACTGTAGATGGTCTGTGAAAACCATCGATTCTAGTTCGTGCAGT GTTGACATTAGTGCTGGTGCACATTTCAAGAAATGGTGCATAATGCAGTCTAAGATAAAG AGCGGTGCTGTGGACGAGAGTTAAAGAAGGAAACTAGAGAAATGTTAGGGTTTGCGGAGT CGTATATGCTAAAAGTTAGCTTCCCTACCCAAGAAGACAACACGGAGCCAGACGCAGATG ACAAACCTGGTGATCAGTAACTCATGACAGCCTATTTGAGCATGCTCTCTTCTAATGGCA GCCACGGTCCCGTGATGGTGGTTTATGATGATACCCAGTGGACCTGTAACTGTAACTAGT CCAAATTTGATATGATTAGCTGCCTTAAAGAAGAAAAATGTTTAGGAAGTCCTATATTGT GTAAACTTTTGGCTTACGTATATCTCTTTTTCTTTAAAAGAGAAGGATAACCCTGGCCTC TGTATCATTGCATGCACACAACCATATTTA