- Gene HORVU6Hr1G085120
- Gene IDHORVU6Hr1G085120
- Location chr6H: 557775734 - 557784987
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u47383 | 97.8 | - | - | 9254 | -207 | Containing |
Transcripts from Gene HORVU6Hr1G085120
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU6Hr1G085120.1 | 1452 | gene=HORVU6Hr1G085120 CDS=2-358 |
| HORVU6Hr1G085120.2 | 2605 | gene=HORVU6Hr1G085120 CDS=610-1740 |
| HORVU6Hr1G085120.3 | 1655 | gene=HORVU6Hr1G085120 CDS=230-793 |
| HORVU6Hr1G085120.4 | 1977 | gene=HORVU6Hr1G085120 CDS=560-1291 |
| HORVU6Hr1G085120.5 | 1784 | gene=HORVU6Hr1G085120 CDS=562-987 |
| HORVU6Hr1G085120.6 | 1797 | gene=HORVU6Hr1G085120 CDS=576-1001 |
| HORVU6Hr1G085120.7 | 1845 | gene=HORVU6Hr1G085120 CDS=433-1563 |
| HORVU6Hr1G085120.8 | 1921 | gene=HORVU6Hr1G085120 CDS=576-1235 |
| HORVU6Hr1G085120.9 | 1794 | gene=HORVU6Hr1G085120 CDS=3-998 |
| HORVU6Hr1G085120.10 | 2111 | gene=HORVU6Hr1G085120 CDS=2-1315 |
| HORVU6Hr1G085120.11 | 2457 | gene=HORVU6Hr1G085120 CDS=3-1595 |
| HORVU6Hr1G085120.12 | 2408 | gene=HORVU6Hr1G085120 CDS=466-1320 |
| HORVU6Hr1G085120.13 | 669 | gene=HORVU6Hr1G085120 CDS=234-389 |
| HORVU6Hr1G085120.14 | 1307 | gene=HORVU6Hr1G085120 CDS=3-623 |
| HORVU6Hr1G085120.15 | 1617 | gene=HORVU6Hr1G085120 CDS=261-827 |
| HORVU6Hr1G085120.16 | 1195 | gene=HORVU6Hr1G085120 CDS=471-923 |
| HORVU6Hr1G085120.17 | 2304 | gene=HORVU6Hr1G085120 CDS=614-2032 |
| HORVU6Hr1G085120.18 | 2254 | gene=HORVU6Hr1G085120 CDS=614-1468 |
| HORVU6Hr1G085120.19 | 2254 | gene=HORVU6Hr1G085120 CDS=2-1042 |
| HORVU6Hr1G085120.20 | 1407 | gene=HORVU6Hr1G085120 CDS=286-1137 |
| HORVU6Hr1G085120.21 | 2233 | gene=HORVU6Hr1G085120 CDS=229-1086 |
| HORVU6Hr1G085120.22 | 2024 | gene=HORVU6Hr1G085120 CDS=1042-1755 |
| HORVU6Hr1G085120.23 | 1976 | gene=HORVU6Hr1G085120 CDS=247-816 |
| HORVU6Hr1G085120.24 | 1172 | gene=HORVU6Hr1G085120 CDS=1-330 |
| HORVU6Hr1G085120.25 | 1885 | gene=HORVU6Hr1G085120 CDS=1240-1623 |
| HORVU6Hr1G085120.26 | 1789 | gene=HORVU6Hr1G085120 CDS=1-1527 |
| HORVU6Hr1G085120.27 | 1820 | gene=HORVU6Hr1G085120 CDS=2-1558 |
| HORVU6Hr1G085120.28 | 1768 | gene=HORVU6Hr1G085120 CDS=2-991 |
| HORVU6Hr1G085120.29 | 1817 | gene=HORVU6Hr1G085120 CDS=2-1555 |
| HORVU6Hr1G085120.30 | 2097 | gene=HORVU6Hr1G085120 CDS=126-1835 |
| HORVU6Hr1G085120.31 | 2090 | gene=HORVU6Hr1G085120 CDS=2-1828 |
| HORVU6Hr1G085120.32 | 2158 | gene=HORVU6Hr1G085120 CDS=193-1896 |
| HORVU6Hr1G085120.33 | 2163 | gene=HORVU6Hr1G085120 CDS=193-1785 |
| HORVU6Hr1G085120.34 | 2161 | gene=HORVU6Hr1G085120 CDS=193-1899 |
| HORVU6Hr1G085120.35 | 2161 | gene=HORVU6Hr1G085120 CDS=193-1899 |
| HORVU6Hr1G085120.36 | 1765 | gene=HORVU6Hr1G085120 CDS=371-1504 |
| HORVU6Hr1G085120.37 | 1717 | gene=HORVU6Hr1G085120 CDS=450-941 |
| HORVU6Hr1G085120.38 | 2016 | gene=HORVU6Hr1G085120 CDS=1373-1756 |
| HORVU6Hr1G085120.39 | 1866 | gene=HORVU6Hr1G085120 CDS=1-1380 |
| HORVU6Hr1G085120.40 | 1760 | gene=HORVU6Hr1G085120 CDS=2-625 |
| HORVU6Hr1G085120.41 | 1876 | gene=HORVU6Hr1G085120 CDS=247-1101 |
| HORVU6Hr1G085120.42 | 1925 | gene=HORVU6Hr1G085120 CDS=247-1665 |
| HORVU6Hr1G085120.43 | 669 | gene=HORVU6Hr1G085120 CDS=255-410 |
| HORVU6Hr1G085120.44 | 1603 | gene=HORVU6Hr1G085120 CDS=3-764 |
| HORVU6Hr1G085120.45 | 1621 | gene=HORVU6Hr1G085120 CDS=3-485 |
| HORVU6Hr1G085120.46 | 2191 | gene=HORVU6Hr1G085120 CDS=272-1126 |
| HORVU6Hr1G085120.47 | 2020 | gene=HORVU6Hr1G085120 CDS=272-1357 |
| HORVU6Hr1G085120.48 | 2083 | gene=HORVU6Hr1G085120 CDS=2-1018 |
| HORVU6Hr1G085120.49 | 1928 | gene=HORVU6Hr1G085120 CDS=956-1669 |
| HORVU6Hr1G085120.50 | 1791 | gene=HORVU6Hr1G085120 CDS=452-1018 |
| HORVU6Hr1G085120.51 | 1860 | gene=HORVU6Hr1G085120 CDS=3-1301 |
| HORVU6Hr1G085120.52 | 2295 | gene=HORVU6Hr1G085120 CDS=834-1631 |
| HORVU6Hr1G085120.53 | 1890 | gene=HORVU6Hr1G085120 CDS=141-1058 |
| HORVU6Hr1G085120.54 | 2127 | gene=HORVU6Hr1G085120 CDS=2-1885 |
| HORVU6Hr1G085120.55 | 2078 | gene=HORVU6Hr1G085120 CDS=2-1321 |
| HORVU6Hr1G085120.56 | 1241 | gene=HORVU6Hr1G085120 CDS=159-866 |
| HORVU6Hr1G085120.57 | 1757 | gene=HORVU6Hr1G085120 CDS=3-1256 |
| HORVU6Hr1G085120.58 | 1739 | gene=HORVU6Hr1G085120 CDS=2-769 |
| HORVU6Hr1G085120.59 | 2202 | gene=HORVU6Hr1G085120 CDS=246-1100 |
| HORVU6Hr1G085120.60 | 1846 | gene=HORVU6Hr1G085120 CDS=373-1227 |
| HORVU6Hr1G085120.61 | 1728 | gene=HORVU6Hr1G085120 CDS=373-999 |
| HORVU6Hr1G085120.62 | 1849 | gene=HORVU6Hr1G085120 CDS=3-1634 |
| HORVU6Hr1G085120.63 | 1744 | gene=HORVU6Hr1G085120 CDS=383-1744 |
Exon Structure of HORVU6Hr1G085120
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g34130.1 | +1 | 0.0 | 712 | 333/395 (84%) | protein|GRAM domain containing protein, expressed |
| TAIR PP10 | AT3G59660 @ ARAPORT AT3G59660.1 @ TAIR |
+1 | 0.0 | 557 | 259/396 (65%) | Symbols: | C2 domain-containing protein / GRAM domain-containing protein | chr3:22034426-22038484 REVERSE LENGTH=594 |
| BRACH PP3 | Bradi4g35301.1.p | +1 | 0.0 | 728 | 342/395 (87%) | pacid=32787900 transcript=Bradi4g35301.1 locus=Bradi4g35301 ID=Bradi4g35301.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons