Exon Structure of HORVU6Hr1G085120.42

ChromosomeExonStartStopDirection
chr6H1557776138557775759-
chr6H2557776874557776813-
chr6H3557777077557777014-
chr6H4557777387557777334-
chr6H5557777826557777680-
chr6H6557778002557777898-
chr6H7557778218557778078-
chr6H8557778541557778435-
chr6H9557781982557781883-
chr6H10557782102557782073-
chr6H11557782889557782773-
chr6H12557783122557782999-
chr6H13557783402557783356-
chr6H14557783611557783483-
chr6H15557783901557783826-
chr6H16557784351557784254-
chr6H17557784610557784467-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os09g34130.1 +1 0.0 857 402/488 (82%) protein|GRAM domain containing protein, expressed
TAIR PP10 AT3G59660 @ ARAPORT
AT3G59660.1 @ TAIR
+1 0.0 668 308/471 (65%) Symbols: | C2 domain-containing protein / GRAM domain-containing protein | chr3:22034426-22038484 REVERSE LENGTH=594
BRACH PP3 Bradi4g35301.1.p +1 0.0 880 423/498 (85%) pacid=32787900 transcript=Bradi4g35301.1 locus=Bradi4g35301 ID=Bradi4g35301.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (1925 bp)

>HORVU6Hr1G085120.42 1925 150831_barley_pseudomolecules
GCAAATTTGGGCGCGGCGACGAGCGGCCGCCTGTTCTAACGTCGCGACCGTTTTTGTTTT
GGCCTTCGTCTGCTCTGCTCCGCTCTGCGCGCCGGGATCGCCGCTCAGTGTCACGAGGGA
GCGCCGCCGGCGTATGCTGTCAAGCTGAAGCTGCTGGCCGCCAAGGATTTGATCGCGGCC
AACTTGAACGGCACCTCCGACCCGTACGCACTCATCACCTGCGGCCAAGATAAGCGTTTC
AGCTCCATGGTTCCTGGCTCAAGAAACCCAATGTGGGGAGAGGAATTCAATTTTGTTGTT
GACTGTCTTCCTGCAAAGATAAAGGTGGAACTATATGACTGGGACCTAGTATGGAAAAGC
ACAACACTTGGTTCTGTTACAGTTCCAGTTGAGTCTGAGAAGCAGAGTGGACCAGTTTGG
TATACACTTGACAGCTCATCAGGGCGGGTTTGTCTCCATATCAAGGCAATCAGGGTTAAT
GAGAGTTCCTCCAGGGCTCTAAACAACTCTGCCGAGGCTGATGCTCGTAAAAGGATGTCC
TTAGACAAAGAAGGCCCTATTGTCGTTCACCAAAAGCCAGGTCATTTACAGACAATTTTT
GGGCTACCTCCAGATGAGGTTGTTGAACACAGTTATTCATGTGCACTTGAGAGGTCATTT
CTGTATCACGGCCGCATGTATGTGTCTTTATGGCACATTTGCTTCTATTCGAACATCTTC
TCTAAGCAGATTAAGGTTGAGCTCCCTTTGAGAGATATTGATGAGATAACAAAAAGCCAA
CTTGCAGTTATTAATCCTGCAATTACGATATTTCTTCGAACGGGAGCTGGAGGACATGGA
GTTCCTTCCTTAGGATGCCCTGATGGAAGAGTTAGATATATATTTGCATCGTTTTGGAAC
AGAAACCACACAATTAGAGCACTGGAACAAGCTGTGAAGAACTTCCATACCATGATAGAG
GCTGAGAAACAGGAACGTGCTCGATCTGCATTACGTGCACTCAGTGGCTCAAGAAAAAAT
AGCATGGAGATAGATGTTCCAGAAGATTGTGCTGATTTAATAGGTCTATTACAACCTTTT
GTCAAAGAAGAAGTTCTAGTCTCTGTATTTGATGGAACATTTCCGTGTACTGCAGACCAG
TTTTTCAATAATCTTATAAGTGATGACTCAACTTACACAACAGAATATCGAACAGCTCGT
CAGGATAAAGATATCAAACTGGGCCAGTGGCACCTTGCAGACGAGTATGATGGTCAGGTG
AGAGAACTTAACTGTAAATCCATGTGCCACAGTCCGATGTGCCCTCCATATTCAGCAATT
ACAGAGTGGCAGCATACGGTTCTTTCAGCTAACAAAACCGATCTGGTATTCGAGACTGTA
CAACAAGTACATGATGTTCCCTTTGGTTCCTATTTTGAGATACACTGTAGATGGTCTGTG
AAAACCATCGATTCTAGTTCGTGCAGTGTTGACATTAGTGCTGGTGCACATTTCAAGAAA
TGGTGCATAATGCAGTCTAAGATAAAGAGCGGTGCTGTGGACGAGTTAAAGAAGGAAACT
AGAGAAATGTTAGGGTTTGCGGAGTCGTATATGCTAAAAGTTAGCTTCCCTACCCAAGAA
GACAACACGGAGCCAGACGCAGATGACAAACCTGGTGATCAGTAACTCATGACAGCCTAT
TTGAGCATGCTCTCTTCTAATGGCAGCCACGGTCCCGTGATGGTGGTTTATGATGATACC
CAGTGGACCTGTAACTGTAACTAGTCCAAATTTGATATGATTAGCTGCCTTAAAGAAGAA
AAATGTTTAGGAAGTCCTATATTGTGTAAACTTTTGGCTTACGTATATCTCTTTTTCTTT
AAAAGAGAAGGATAACCCTGGCCTCTGTATCATTGCATGCACACAACCATATTTATTAAA
CGACG