- Transcript HORVU6Hr1G085120.4
- Transcript IDHORVU6Hr1G085120.4
- Gene IDHORVU6Hr1G085120
Barley RTD
Exon Structure of HORVU6Hr1G085120.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 557776138 | 557775737 | - |
| chr6H | 2 | 557776875 | 557776813 | - |
| chr6H | 3 | 557777077 | 557777015 | - |
| chr6H | 4 | 557777389 | 557777334 | - |
| chr6H | 5 | 557778218 | 557777682 | - |
| chr6H | 6 | 557778541 | 557778435 | - |
| chr6H | 7 | 557781982 | 557781883 | - |
| chr6H | 8 | 557782102 | 557782073 | - |
| chr6H | 9 | 557782891 | 557782773 | - |
| chr6H | 10 | 557783122 | 557782999 | - |
| chr6H | 11 | 557783402 | 557783356 | - |
| chr6H | 12 | 557783611 | 557783483 | - |
| chr6H | 13 | 557783901 | 557783826 | - |
| chr6H | 14 | 557784354 | 557784254 | - |
| chr6H | 15 | 557784489 | 557784467 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g34130.1 | +2 | 0.0 | 346 | 170/234 (73%) | protein|GRAM domain containing protein, expressed |
| TAIR PP10 | AT3G59660 @ ARAPORT AT3G59660.1 @ TAIR |
+2 | 9e-130 | 279 | 138/252 (55%) | Symbols: | C2 domain-containing protein / GRAM domain-containing protein | chr3:22034426-22038484 REVERSE LENGTH=594 |
| BRACH PP3 | Bradi4g35301.1.p | +2 | 0.0 | 357 | 177/234 (76%) | pacid=32787900 transcript=Bradi4g35301.1 locus=Bradi4g35301 ID=Bradi4g35301.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1977 bp)
>HORVU6Hr1G085120.4 1977 150831_barley_pseudomolecules CGCCGCCGGCGTATGCTGTCAAGCAGCTGAAGCTGCTGGCCGCCAAGGATTTGATCGCGG CCAACTTGAACGGCACCTCCGACCCGTACGCACTCATCACCTGCGGCCAAGATAAGCGTT TCAGCTCCATGGTTCCTGGCTCAAGAAACCCAATGTGGGGAGAGGAATTCAATTTTGTTG TTGACTGTCTTCCTGCAAAGATAAAGGTGGAACTATATGACTGGGACCTAGTATGGAAAA GCACAACACTTGGTTCTGTTACAGTTCCAGTTGAGTCTGAGAAGCAGAGTGGACCAGTTT GGTATACACTTGACAGCTCATCAGGGCGGGTTTGTCTCCATATCAAGGCAATCAGGGTTA ATGAGAGTTCCTCCAGGGCTCTAAACAACTCTGCCGAGGCTGATGCTCGTAAAAGGATGT CCTTAGACAAAGAAGGCCCTATTGTCGTTCACCAAAAGCCAGGTCATTTACAGACAATTT TTGGGCTACCTCCAGATGAGAGGTTGTTGAACACAGTTATTCATGTGCACTTGAGAGGTC ATTTCTGTATCACGGCCGCATGTATGTGTCTTTATGGCACATTTGCTTCTATTCGAACAT CTTCTCTAAGCAGATTAAGGTTGAGCTCCCTTTGAGAGATATTGATGAGATAACAAAAAG CCAACTTGCAGTTATTAATCCTGCAATTACGATATTTCTTCGAACGGGAGCTGGAGGACA TGGAGTTCCTTCCTTAGGATGCCCTGATGGAAGAGTTAGATATATATTTGCATCGTTTTG GAACAGAAACCACACAATTAGAGCACTGGAACAAGCTGTGAAGAACTTCCATACCATGAT AGAGGCTGAGAAACAGGAACGTGCTCGATCTGCATTACGTGCACTCAGTGGCTCAAGAAA AAATAGCATGGAGATAGATGTTCCAGAAGATTGTGCTGATTTAATAGGTCTATTACAACC TTTTGTCAAAGAAGAAGTTCTAGTCTCTGTATTTGATGTAATGATAACTAACTGTATCTT CCATGATTTTGCAATTGATAATACAACTGATCTTCAACTCATCTCATCTCAGGGAACATT TCCGTGTACTGCAGACCAGTTTTTCAATAATCTTATAAGTGATGACTCAACTTACACAAC AGAATATCGAACAGCTCGTCAGGATAAAGATATCAAAGCAAGTATCCAGCACAGTGCCAG CACTCTGAGTCATGAATTATCGCTGACTAGAAATATTTGTGTATGCAGCTGGGCCAGTGG CACCTTGCAGACGAGTATGATGGTCAGGTGAGAGAACTTAACTGTAAATCCATGTGCCAC AGTCCGATGTGCCCTCCATATTCAGCAATTACAGAGTGGCAGCATACGGTTCTTTCAGCT AACAAAACCGATCAGGTATTCGAGACTGTACAACAAGTACATGATGTTCCCTTTGGTTCC TATTTTGAGATACACTGTAGATGGTCTGTGAAAACCATCGATTCTAGTTCGTGCAGTGTT GACATTAGTGCTGGTGCACATTTCAAGAAATGGTGCATAATGCAGTCTAAGATAAAGAGC GGTGCTGTGGACGAGTTAAAGAAGGAAACTAGAGAAATGTTAGGGTTTGCGGAGTCGTAT ATGCTAAAAGTTAGCTTCCCTACCCAAGAAGACAACACGGAGCCAGACGCAGATGACAAA CCTGGTGATCAGTAACTCATGACAGCCTATTTGAGCATGCTCTCTTCTAATGGCAGCCAC GGTCCCGTGATGGTGGTTTATGATGATACCCAGTGGACCTGTAACTGTAACTAGTCCAAA TTTGATATGATTAGCTGCCTTAAAGAAGAAAAATGTTTAGGAAGTCCTATATTGTGTAAA CTTTTGGCTTACGTATATCTCTTTTTCTTTAAAAGAGAAGGATAACCCTGGCCTCTGTAT CATTGCATGCACACAACCATATTTATTAAACGACGAGTATCAAGATCTTTTAAAAAA