- Transcript HORVU6Hr1G085120.38
- Transcript IDHORVU6Hr1G085120.38
- Gene IDHORVU6Hr1G085120
Barley RTD
Exon Structure of HORVU6Hr1G085120.38
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 557776138 | 557775759 | - |
| chr6H | 2 | 557776874 | 557776813 | - |
| chr6H | 3 | 557777077 | 557777014 | - |
| chr6H | 4 | 557777387 | 557777334 | - |
| chr6H | 5 | 557777826 | 557777680 | - |
| chr6H | 6 | 557778002 | 557777898 | - |
| chr6H | 7 | 557778218 | 557778128 | - |
| chr6H | 8 | 557778541 | 557778435 | - |
| chr6H | 9 | 557779664 | 557778659 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g34130.1 | +2 | 1e-111 | 306 | 139/178 (78%) | protein|GRAM domain containing protein, expressed |
| TAIR PP10 | AT3G59660 @ ARAPORT AT3G59660.1 @ TAIR |
+2 | 3e-77 | 224 | 98/159 (62%) | Symbols: | C2 domain-containing protein / GRAM domain-containing protein | chr3:22034426-22038484 REVERSE LENGTH=594 |
| BRACH PP3 | Bradi4g35301.1.p | +2 | 3e-117 | 321 | 155/188 (82%) | pacid=32787900 transcript=Bradi4g35301.1 locus=Bradi4g35301 ID=Bradi4g35301.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2016 bp)
>HORVU6Hr1G085120.38 2016 150831_barley_pseudomolecules GTAGGTCTCTGCATAGCGGATAGATAAAGTGTGCTGATAATGTCAAGAGAGATTGGGGTA GATCAAACTTGACATGAGACGAGTCCGTTAAGAGAGATCTGAAGGACTAGAAATATCACC AAAGAACTAGCCATGGACAGGGGTCCATGGAAGTTAGCCATCCATGTGCTAGAACCATGA CTTGGGTCCATGAAAGTTAGCCATCCATGTGCCAGAACAATGACTTGGTTTCGAGATCTT ATGATTTCAACTCTAGTCTATCCCAACTTATTTGGGACTGGAAGGCTTTGTGATTATTGT AGTTGTCAAATCTCGCTTTATTGTTTGACACTATAAATCATGACGCTTTTTAATTCCATT TTTGGCCATCCAGCTAAACTAGGCGCATGCAGTAGCGGAGCTACAATTAGACTACGTGCC AGGCAGGCTCTATGGCTACAGTGTTATGCAGTGTGCTACAGTGGTGCACGAAGAAAATCG TGACCACGCCCCAGGCCAAGGCCCTCGCTGCCTTGGGCCTGGATCCGCCTCTGGGTACAT GCATAATGTGGTCTTCTCTATTTTTCGGTTTGACTGTGTTTTTTTTGCTCCCATTCAATC TTCTATGATTCTATTTCTAAGCAACATCAACATGTTTGGTATTACTACTTATTAGTCGAC AGTGACGGAGTCAGCCAGCTCAAGGAGCCCGGGCAAATTCTTTACACGGTGACGTGGTAG AGCATTTGCCCAAGGAATTAGCAATGCTAATCATGGTTGTTTTGCACTAATTAGTGAAGA ATGGACGGAGCAGCCCGTGCAGCTGCCCTGGGTCACCGGGAGCTAGCTCCGCCACTGTTA GTCAATGACTTGGTGTAGATTTCCGTTTCGTGAGTGTAGATTGCATTCCACCATGACTTG AGATGCAGGTTTATTTGATGTGAAATTGGTTGCAAGCTTAAGAAGTGCGGAGGAAGCTAG TGATCATGCATTCATGCTAGAAAACAGAGTAAAAGGGCTGATAAGGGAAGAGTTAGATAT ATATTTGCATCGTTTTGGAACAGAAACCACACAATTAGAGCACTGGAACAAGCTGTGAAG AACTTCCATACCATGATAGAGGCTGAGAAACAGGAACGTGCTCGATCTGCATTACGTGCA CTCAGTGGCTCAAGAAAAAATAGCATGGAGATAGATGTTCCAGAAGATTGTGCTGATTTA ATAGGGAACATTTCCGTGTACTGCAGACCAGTTTTTCAATAATCTTATAAGTGATGACTC AACTTACACAACAGAATATCGAACAGCTCGTCAGGATAAAGATATCAAACTGGGCCAGTG GCACCTTGCAGACGAGTATGATGGTCAGGTGAGAGAACTTAACTGTAAATCCATGTGCCA CAGTCCGATGTGCCCTCCATATTCAGCAATTACAGAGTGGCAGCATACGGTTCTTTCAGC TAACAAAACCGATCTGGTATTCGAGACTGTACAACAAGTACATGATGTTCCCTTTGGTTC CTATTTTGAGATACACTGTAGATGGTCTGTGAAAACCATCGATTCTAGTTCGTGCAGTGT TGACATTAGTGCTGGTGCACATTTCAAGAAATGGTGCATAATGCAGTCTAAGATAAAGAG CGGTGCTGTGGACGAGTTAAAGAAGGAAACTAGAGAAATGTTAGGGTTTGCGGAGTCGTA TATGCTAAAAGTTAGCTTCCCTACCCAAGAAGACAACACGGAGCCAGACGCAGATGACAA ACCTGGTGATCAGTAACTCATGACAGCCTATTTGAGCATGCTCTCTTCTAATGGCAGCCA CGGTCCCGTGATGGTGGTTTATGATGATACCCAGTGGACCTGTAACTGTAACTAGTCCAA ATTTGATATGATTAGCTGCCTTAAAGAAGAAAAATGTTTAGGAAGTCCTATATTGTGTAA ACTTTTGGCTTACGTATATCTCTTTTTCTTTAAAAGAGAAGGATAACCCTGGCCTCTGTA TCATTGCATGCACACAACCATATTTATTAAACGACG