- Transcript HORVU6Hr1G085120.3
- Transcript IDHORVU6Hr1G085120.3
- Gene IDHORVU6Hr1G085120
Barley RTD
Exon Structure of HORVU6Hr1G085120.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 557776138 | 557775737 | - |
| chr6H | 2 | 557776874 | 557776813 | - |
| chr6H | 3 | 557777077 | 557777014 | - |
| chr6H | 4 | 557777826 | 557777334 | - |
| chr6H | 5 | 557778002 | 557777898 | - |
| chr6H | 6 | 557778218 | 557778078 | - |
| chr6H | 7 | 557778822 | 557778435 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g34130.1 | +2 | 2e-94 | 301 | 140/169 (83%) | protein|GRAM domain containing protein, expressed |
| TAIR PP10 | AT3G59660 @ ARAPORT AT3G59660.1 @ TAIR |
+2 | 4e-61 | 212 | 98/170 (58%) | Symbols: | C2 domain-containing protein / GRAM domain-containing protein | chr3:22034426-22038484 REVERSE LENGTH=594 |
| BRACH PP3 | Bradi4g35301.2.p | +2 | 4e-100 | 311 | 147/169 (87%) | pacid=32787901 transcript=Bradi4g35301.2 locus=Bradi4g35301 ID=Bradi4g35301.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1655 bp)
>HORVU6Hr1G085120.3 1655 150831_barley_pseudomolecules CAATGACTTGGTGTAGATTTCCGTTTCGTGAGTGTAGATTGCATTCCACCATGACTTGAG ATGCAGGTTTATTTGATGTGAAATTGGTTGCAAGCTTAAGAAGTGCGGAGGAAGCTAGTG ATCATGCATTCATGCTAGAAAACAGAGTAAAAGGGCTGATAAGGGTAATCTTTTCTTTTT GGAAAAGGAGGAACTTAGCCCCCGGCCTGATAAGGGTAATCTAGATAAGATGGGAGGTTT CATCAATTGCTTTATGTCACCTTTTTATATTATTTTTGCAGGAAGAGTTAGATATATATT TGCATCGTTTTGGAACAGAAACCACACAATTAGAGCACTGGAACAAGCTGTGAAGAACTT CCATACCATGATAGAGGCTGAGAAACAGGAACGTGCTCGATCTGCATTACGTGCACTCAG TGGCTCAAGAAAAAATAGCATGGAGATAGATGTTCCAGAAGATTGTGCTGATTTAATAGG TCTATTACAACCTTTTGTCAAAGAAGAAGTTCTAGTCTCTGTATTTGATGGAACATTTCC GTGTACTGCAGACCAGTTTTTCAATAATCTTATAAGTGATGACTCAACTTACACAACAGA ATATCGAACAGCTCGTCAGGATAAAGATATCAAACTGGGCCAGTGGCACCTTGCAGACGA GTATGATGGTCAGGTGAGAGAACTTAACTGTAAATCCATGTGCCACAGTCCGATGTGCCC TCCATATTCAGCAATTACAGAGTGGCAGCATACGGTTCTTTCAGCTAACAAAACCGATCT GGTATGTTTTTAATACAAAACTGAACATCCCATTATGACGGCTAACATTTCTTGCGTCAT AGTATTACATTATGTTATACTTCCTCCGTTCCTAAATATAAGACCTTTTAGATATTGCAC TATGAACTATATACGGATGTACATAGGTATATTTTAAAATATAGATTCACTCATTTTGCT CCGTATGTAGTCTCCTAACGTAATCTCTAAAAGGTCTTATATTTTGAAACGGAGGGAGTA TATTACTACTACAGATCATAAATAAATCTGATTGCTAATTTTTTATCTTTTAGGTATTCG AGACTGTACAACAAGTACATGATGTTCCCTTTGGTTCCTATTTTGAGATACACTGTAGAT GGTCTGTGAAAACCATCGATTCTAGTTCGTGCAGTGTTGACATTAGTGCTGGTGCACATT TCAAGAAATGGTGCATAATGCAGTCTAAGATAAAGAGCGGTGCTGTGGACGAGTTAAAGA AGGAAACTAGAGAAATGTTAGGGTTTGCGGAGTCGTATATGCTAAAAGTTAGCTTCCCTA CCCAAGAAGACAACACGGAGCCAGACGCAGATGACAAACCTGGTGATCAGTAACTCATGA CAGCCTATTTGAGCATGCTCTCTTCTAATGGCAGCCACGGTCCCGTGATGGTGGTTTATG ATGATACCCAGTGGACCTGTAACTGTAACTAGTCCAAATTTGATATGATTAGCTGCCTTA AAGAAGAAAAATGTTTAGGAAGTCCTATATTGTGTAAACTTTTGGCTTACGTATATCTCT TTTTCTTTAAAAGAGAAGGATAACCCTGGCCTCTGTATCATTGCATGCACACAACCATAT TTATTAAACGACGAGTATCAAGATCTTTTAAAAAA