- Transcript HORVU6Hr1G085120.24
- Transcript IDHORVU6Hr1G085120.24
- Gene IDHORVU6Hr1G085120
Barley RTD
Exon Structure of HORVU6Hr1G085120.24
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 557776138 | 557775757 | - |
| chr6H | 2 | 557776874 | 557776813 | - |
| chr6H | 3 | 557777077 | 557777014 | - |
| chr6H | 4 | 557777826 | 557777334 | - |
| chr6H | 5 | 557778068 | 557777898 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g34130.1 | +1 | 2e-44 | 163 | 70/85 (82%) | protein|GRAM domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi4g35301.2.p | +1 | 1e-47 | 169 | 74/85 (87%) | pacid=32787901 transcript=Bradi4g35301.2 locus=Bradi4g35301 ID=Bradi4g35301.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1172 bp)
>HORVU6Hr1G085120.24 1172 150831_barley_pseudomolecules ACTAACTGTATCTTCCATGATTTTGCAATTGATAATACAACTGATCTTCAACTCATCTCA TCTCAGGGAACATTTCCGTGTACTGCAGACCAGTTTTTCAATAATCTTATAAGTGATGAC TCAACTTACACAACAGAATATCGAACAGCTCGTCAGGATAAAGATATCAAACTGGGCCAG TGGCACCTTGCAGACGAGTATGATGGTCAGGTGAGAGAACTTAACTGTAAATCCATGTGC CACAGTCCGATGTGCCCTCCATATTCAGCAATTACAGAGTGGCAGCATACGGTTCTTTCA GCTAACAAAACCGATCTGGTATGTTTTTAATACAAAACTGAACATCCCATTATGACGGCT AACATTTCTTGCGTCATAGTATTACATTATGTTATACTTCCTCCGTTCCTAAATATAAGA CCTTTTAGATATTGCACTATGAACTATATACGGATGTACATAGGTATATTTTAAAATATA GATTCACTCATTTTGCTCCGTATGTAGTCTCCTAACGTAATCTCTAAAAGGTCTTATATT TTGAAACGGAGGGAGTATATTACTACTACAGATCATAAATAAATCTGATTGCTAATTTTT TATCTTTTAGGTATTCGAGACTGTACAACAAGTACATGATGTTCCCTTTGGTTCCTATTT TGAGATACACTGTAGATGGTCTGTGAAAACCATCGATTCTAGTTCGTGCAGTGTTGACAT TAGTGCTGGTGCACATTTCAAGAAATGGTGCATAATGCAGTCTAAGATAAAGAGCGGTGC TGTGGACGAGTTAAAGAAGGAAACTAGAGAAATGTTAGGGTTTGCGGAGTCGTATATGCT AAAAGTTAGCTTCCCTACCCAAGAAGACAACACGGAGCCAGACGCAGATGACAAACCTGG TGATCAGTAACTCATGACAGCCTATTTGAGCATGCTCTCTTCTAATGGCAGCCACGGTCC CGTGATGGTGGTTTATGATGATACCCAGTGGACCTGTAACTGTAACTAGTCCAAATTTGA TATGATTAGCTGCCTTAAAGAAGAAAAATGTTTAGGAAGTCCTATATTGTGTAAACTTTT GGCTTACGTATATCTCTTTTTCTTTAAAAGAGAAGGATAACCCTGGCCTCTGTATCATTG CATGCACACAACCATATTTATTAAACGACGAG