- Transcript HORVU6Hr1G085120.16
- Transcript IDHORVU6Hr1G085120.16
- Gene IDHORVU6Hr1G085120
Barley RTD
Exon Structure of HORVU6Hr1G085120.16
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 557776138 | 557775747 | - |
| chr6H | 2 | 557776874 | 557776813 | - |
| chr6H | 3 | 557777077 | 557777014 | - |
| chr6H | 4 | 557777387 | 557777334 | - |
| chr6H | 5 | 557778002 | 557777680 | - |
| chr6H | 6 | 557778218 | 557778128 | - |
| chr6H | 7 | 557778541 | 557778435 | - |
| chr6H | 8 | 557781984 | 557781883 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g34130.1 | +3 | 6e-135 | 400 | 205/309 (66%) | protein|GRAM domain containing protein, expressed |
| TAIR PP10 | AT3G59660 @ ARAPORT AT3G59660.1 @ TAIR |
+3 | 1e-96 | 300 | 152/291 (52%) | Symbols: | C2 domain-containing protein / GRAM domain-containing protein | chr3:22034426-22038484 REVERSE LENGTH=594 |
| BRACH PP3 | Bradi4g35301.2.p | +3 | 3e-144 | 419 | 222/319 (70%) | pacid=32787901 transcript=Bradi4g35301.2 locus=Bradi4g35301 ID=Bradi4g35301.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1195 bp)
>HORVU6Hr1G085120.16 1195 150831_barley_pseudomolecules AGATAACAAAAAGCCAACTTGCAGTTATTAATCCTGCAATTACGATATTTCTTCGAACGG GAGCTGGAGGACATGGAGTTCCTTCCTTAGGATGCCCTGATGGAAGAGTTAGATATATAT TTGCATCGTTTTGGAACAGAAACCACACAATTAGAGCACTGGAACAAGCTGTGAAGAACT TCCATACCATGATAGAGGCTGAGAAACAGGAACGTGCTCGATCTGCATTACGTGCACTCA GTGGCTCAAGAAAAAATAGCATGGAGATAGATGTTCCAGAAGATTGTGCTGATTTAATAG GGAACATTTCCGTGTACTGCAGACCAGTTTTTCAATAATCTTATAAGTGATGACTCAACT TACACAACAGAATATCGAACAGCTCGTCAGGATAAAGATATCAAAGCAAGTATCCAGCAC AGTGCCAGCACTCTGAGTCATGAATTATCGCTGACTAGAAATATTTGTGTATGCAGCTGG GCCAGTGGCACCTTGCAGACGAGTATGATGGTCAGGTGAGAGAACTTAACTGTAAATCCA TGTGCCACAGTCCGATGTGCCCTCCATATTCAGCAATTACAGAGTGGCAGCATACGGTTC TTTCAGCTAACAAAACCGATCTGGTATTCGAGACTGTACAACAAGTACATGATGTTCCCT TTGGTTCCTATTTTGAGATACACTGTAGATGGTCTGTGAAAACCATCGATTCTAGTTCGT GCAGTGTTGACATTAGTGCTGGTGCACATTTCAAGAAATGGTGCATAATGCAGTCTAAGA TAAAGAGCGGTGCTGTGGACGAGTTAAAGAAGGAAACTAGAGAAATGTTAGGGTTTGCGG AGTCGTATATGCTAAAAGTTAGCTTCCCTACCCAAGAAGACAACACGGAGCCAGACGCAG ATGACAAACCTGGTGATCAGTAACTCATGACAGCCTATTTGAGCATGCTCTCTTCTAATG GCAGCCACGGTCCCGTGATGGTGGTTTATGATGATACCCAGTGGACCTGTAACTGTAACT AGTCCAAATTTGATATGATTAGCTGCCTTAAAGAAGAAAAATGTTTAGGAAGTCCTATAT TGTGTAAACTTTTGGCTTACGTATATCTCTTTTTCTTTAAAAGAGAAGGATAACCCTGGC CTCTGTATCATTGCATGCACACAACCATATTTATTAAACGACGAGTATCAAGATC