Transcript Data
Barley RTD
Links



Exon Structure of HORVU6Hr1G085120.13

ChromosomeExonStartStopDirection
chr6H1557776138557775739-
chr6H2557776874557776813-
chr6H3557777220557777014-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7None-----
TAIR PP10None-----
BRACH PP3 Bradi4g35301.2.p +3 1e-32 123 67/90 (74%) pacid=32787901 transcript=Bradi4g35301.2 locus=Bradi4g35301 ID=Bradi4g35301.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (669 bp)

>HORVU6Hr1G085120.13 669 150831_barley_pseudomolecules
GTTTTCAGTCTTTCTTGCCATTCTGATTCCAAAATTATTTTATTTTATAGTGTTATGAAA
ACCTATTTTTAGATTACACTGTTAGAAATACAATTGTTCAACTATGATTTGACAATATAA
TTAATTGATGTTCCACTTTTCAGATACACTGTAGATGGTCTGTGAAAACCATCGATTCTA
GTTCGTGCAGTGTTGACATTAGTGCTGGTGCACATTTCAAGAAATGGTGCATAATGCAGT
CTAAGATAAAGAGCGGTGCTGTGGACGAGTTAAAGAAGGAAACTAGAGAAATGTTAGGGT
TTGCGGAGTCGTATATGCTAAAAGTTAGCTTCCCTACCCAAGAAGACAACACGGAGCCAG
ACGCAGATGACAAACCTGGTGATCAGTAACTCATGACAGCCTATTTGAGCATGCTCTCTT
CTAATGGCAGCCACGGTCCCGTGATGGTGGTTTATGATGATACCCAGTGGACCTGTAACT
GTAACTAGTCCAAATTTGATATGATTAGCTGCCTTAAAGAAGAAAAATGTTTAGGAAGTC
CTATATTGTGTAAACTTTTGGCTTACGTATATCTCTTTTTCTTTAAAAGAGAAGGATAAC
CCTGGCCTCTGTATCATTGCATGCACACAACCATATTTATTAAACGACGAGTATCAAGAT
CTTTTAAAA