- Transcript HORVU6Hr1G039910.5
- Transcript IDHORVU6Hr1G039910.5
- Gene IDHORVU6Hr1G039910
Barley RTD
Exon Structure of HORVU6Hr1G039910.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 210489211 | 210488453 | - |
| chr6H | 2 | 210489368 | 210489298 | - |
| chr6H | 3 | 210489823 | 210489746 | - |
| chr6H | 4 | 210490007 | 210489916 | - |
| chr6H | 5 | 210490160 | 210490092 | - |
| chr6H | 6 | 210490789 | 210490666 | - |
| chr6H | 7 | 210491070 | 210490947 | - |
| chr6H | 8 | 210492067 | 210491949 | - |
| chr6H | 9 | 210493332 | 210493241 | - |
| chr6H | 10 | 210493711 | 210493508 | - |
| chr6H | 11 | 210494944 | 210494825 | - |
| chr6H | 12 | 210495512 | 210495417 | - |
| chr6H | 13 | 210495694 | 210495591 | - |
| chr6H | 14 | 210497650 | 210497329 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g13110.1 | +1 | 0.0 | 850 | 458/527 (87%) | protein|serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed |
| TAIR PP10 | AT1G17720 @ ARAPORT AT1G17720.1 @ TAIR |
+1 | 0.0 | 763 | 385/508 (76%) | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=501 |
| BRACH PP3 | Bradi3g08400.3.p | +1 | 0.0 | 925 | 487/517 (94%) | pacid=32816172 transcript=Bradi3g08400.3 locus=Bradi3g08400 ID=Bradi3g08400.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2374 bp)
>HORVU6Hr1G039910.5 2374 150831_barley_pseudomolecules AGAAAAGCGCGAGCAATACAGGGGCGCAGGGGCCGCCTGGAACTCGCTCTCCACATCATT TGGCTGCAGCACCTCACCTCACCTCGTCTCCACCCCTCGATCTCCGTCGCCGTCTCCCCC CATTCTTCCAGGACCATCCCCCCCTCCCGATCTACCCCGCCGACGCGGTCGAGATCCTCG TTCCATGGTGTCGTGACGGCGGCAGCGCTCATGGACCCCAAGTCCCCCGACGACCGCCCG GAGGCGGCGGCACCGCAGCCGCTAGAGTGGCGGTTCGCGCAGGTCTTCGGCGAGCGCGGT GCTGGCGAGGACGTGCAGGAAGTTGACATCATCTCTGCGATCGAGTTTGACAAATCTGGT GATCATCTTGCCACTGGAGATAGGGGTGGACGTGTAGTTTTGTTTGAAAGAACTGATGCC AGGGGTAATGCCAGTCGGACAGAGCTTGAGAGACAAGATTATTCGGTGCCCAGGCATCCT GAGTTCCGCTATAAAACTGAATTTCAGAGTCATGAACCTGAGTTCGATTACCTAAAGAGT TTGGAAATAGAGGAGAAAATCAACAAGATCAAGTGGGGCCAAATAGCCAACAATGCACTC TTTATCTTGTCTACAAATGACAAAACAATCAAGTACTGGAAGGTGCAAGACAAAAAAGTG AAACGAATTTCAGTAATGAATTTGGATACTTCCCAGAGTGCAGACAATGGGACAACTTCT AGTTCGAGTACCAGTAGCTCTAGAGGCCTTCCTAATGGAGGATCCTCAGAAAAGTCATAC AATTATGCAAACAACGATCTGCCATTCCCTCCTGGGGGATATGCATCATTGCGTTTGCCT GTGGTAGTTACAGGCCAAGAGTTAAACCCTGTTGCTAGATGCCGGCGTGTATATGCACAC GCCCATGATTACCATATCAATTCCATTTCAAATAATAGTGATGGTGAGACATTCATATCA GCAGATGATCTGCGAATTAATCTGTGGAATTTGGAAATCAACAGTCAGAGCTTTAACATT GTTGATGTGAAGCCTGTAAACATGGAGGATCTAACTGAGGTGATTACATGTGCGGAGTTC CATCCAACTCACTGTAATACACTAGCCTATAGTAGCTCAAAGGGCGCTATCAGGCTTATT GACCTGCGGCAATCAGCACTGTGTGACAACCATTCTAAGCTATTTGAGGAGCATGAAGCA CCTGGATCAAAATCCTTTTTTACGGAGATAATTGCATCCGTTTCAGATATAAAGTTTGCA AGGGATGGACGGCATATTCTTAGTCGTGATTATATGACTCTCAAGTTATGGGATCTCAAC ATGGATTCAGGCCCAGTAGCAACTTTCCAAGTTCATGAACATTTAAGGCCTAAGCTTTGC GATCTATATGAAAATGATTCAATCTTTGACAAATTTGAATGTTGTCTGAGTGGGGATGGT CATCGTGTTGCGACTGGCTCTTACAGTAACTTATTTCGTGTTTTTGGTTGTACTCCTGGA AATACCGAGGCAACCACTTTAGAAGCAAGCAGAAACCCTATGAGGCGTCAGGTTGCTAAT CCAACAAGGCCTACAAGAACACTGACCTCTTTGACCCGTGCTGTGAGGAGAGGTAGGGGT GAAAATGCAGGAGCCGATGGCAATGGGAATTCTAATGACTTCTCAACAAAGTTACTCCAT CTTGCGTGGCACCCAACTGAGAACTCCATTGCGTGTGCTGCTGGAAATAGCTTGTACATG TATTATGCATAGGGAATGTGCTAGAGAAGATTCACTGTTTTTGGTTTGTGCAACGTGAAA GCTTCGGCCTTGCACATGCAACCAGAGAAATGGTGCAGAACATTGTCATCAATTCTGTGA TTGGGGGTCGGAAGAGGCGGTTGGCACCCAGGGGATGGATATCCTCCAACTCCAAGCATA GCAGACTATTTCCTTCTGATTCTTTAGTAAATGTGAAACACAAATTCTAATCGCACGATT GTAGCTGCATGTGTAGCCAAAACACCAGCAGTTGGAGGACAGAGCAGAAGATAGCAAGGC TGATTCTAATTTCACTTGGTCCCAGGAAATATCTGCTTACGGTGGATGTAAGAAATTTTC TTTTCTCTTCATCAAGTGTAATGTAATGCCGCCTAGCCAGGTTTAACCATCTGCTGTCAC CAACGGTGAAACATCTGTGGACATAAATTATGACTTGTAGCCCCCCCCTCCCCCCTCTAT TTGTTGGTGGTCGAAACTTACAATAAGTTTGCAGGTGTGACTCAACTCCTGCTGCATGTG ATCGGCTATGACCTAAGTTGTATATGCTACATTTTGCCATGCAAAACTCACAACTAATGA TATGGATTCTTGAGTATTCATGTCTGGCTTTTGC