- Gene HORVU6Hr1G039910
- Gene IDHORVU6Hr1G039910
- Location chr6H: 210470020 - 210497833
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u44413 | 100.0 | - | - | 9611 | 18199 | Partial-Overlap |
Transcripts from Gene HORVU6Hr1G039910
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU6Hr1G039910.1 | 1566 | gene=HORVU6Hr1G039910 CDS=1-1566 |
| HORVU6Hr1G039910.2 | 2348 | gene=HORVU6Hr1G039910 CDS=2-1753 |
| HORVU6Hr1G039910.3 | 2409 | gene=HORVU6Hr1G039910 CDS=3-1595 |
| HORVU6Hr1G039910.4 | 2048 | gene=HORVU6Hr1G039910 CDS=2-1426 |
| HORVU6Hr1G039910.5 | 2374 | gene=HORVU6Hr1G039910 CDS=1-1752 |
| HORVU6Hr1G039910.6 | 2047 | gene=HORVU6Hr1G039910 CDS=3-1205 |
| HORVU6Hr1G039910.7 | 2350 | gene=HORVU6Hr1G039910 CDS=3-1793 |
| HORVU6Hr1G039910.8 | 2333 | gene=HORVU6Hr1G039910 CDS=3-1409 |
| HORVU6Hr1G039910.9 | 2357 | gene=HORVU6Hr1G039910 CDS=3-1625 |
| HORVU6Hr1G039910.10 | 2364 | gene=HORVU6Hr1G039910 CDS=3-1535 |
| HORVU6Hr1G039910.11 | 2527 | gene=HORVU6Hr1G039910 CDS=394-1929 |
| HORVU6Hr1G039910.12 | 2530 | gene=HORVU6Hr1G039910 CDS=394-1932 |
| HORVU6Hr1G039910.13 | 2121 | gene=HORVU6Hr1G039910 CDS=3-1529 |
| HORVU6Hr1G039910.14 | 2234 | gene=HORVU6Hr1G039910 CDS=604-1677 |
| HORVU6Hr1G039910.15 | 2233 | gene=HORVU6Hr1G039910 CDS=604-1449 |
| HORVU6Hr1G039910.16 | 2294 | gene=HORVU6Hr1G039910 CDS=1-1530 |
| HORVU6Hr1G039910.17 | 1455 | gene=HORVU6Hr1G039910 CDS=1-1455 |
| HORVU6Hr1G039910.18 | 1452 | gene=HORVU6Hr1G039910 CDS=1-1452 |
| HORVU6Hr1G039910.19 | 1413 | gene=HORVU6Hr1G039910 CDS=1-1413 |
| HORVU6Hr1G039910.20 | 1406 | gene=HORVU6Hr1G039910 CDS=699-1406 |
| HORVU6Hr1G039910.21 | 1506 | gene=HORVU6Hr1G039910 CDS=1-1506 |
| HORVU6Hr1G039910.22 | 1043 | gene=HORVU6Hr1G039910 CDS=1-519 |
| HORVU6Hr1G039910.23 | 677 | gene=HORVU6Hr1G039910 CDS=3-455 |
Exon Structure of HORVU6Hr1G039910
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g13110.1 | +1 | 0.0 | 856 | 460/526 (87%) | protein|serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed |
| TAIR PP10 | AT1G17720 @ ARAPORT AT1G17720.1 @ TAIR |
+1 | 0.0 | 769 | 387/507 (76%) | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=501 |
| BRACH PP3 | Bradi3g08400.3.p | +1 | 0.0 | 930 | 489/516 (95%) | pacid=32816172 transcript=Bradi3g08400.3 locus=Bradi3g08400 ID=Bradi3g08400.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons