- Transcript HORVU6Hr1G039910.4
- Transcript IDHORVU6Hr1G039910.4
- Gene IDHORVU6Hr1G039910
Barley RTD
Exon Structure of HORVU6Hr1G039910.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 210489211 | 210488453 | - |
| chr6H | 2 | 210489368 | 210489301 | - |
| chr6H | 3 | 210489823 | 210489746 | - |
| chr6H | 4 | 210490007 | 210489916 | - |
| chr6H | 5 | 210490160 | 210490092 | - |
| chr6H | 6 | 210490789 | 210490666 | - |
| chr6H | 7 | 210491070 | 210490947 | - |
| chr6H | 8 | 210492067 | 210491949 | - |
| chr6H | 9 | 210493332 | 210493241 | - |
| chr6H | 10 | 210493711 | 210493511 | - |
| chr6H | 11 | 210494944 | 210494825 | - |
| chr6H | 12 | 210495512 | 210495417 | - |
| chr6H | 13 | 210495696 | 210495591 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g13110.1 | +2 | 0.0 | 802 | 428/477 (90%) | protein|serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed |
| TAIR PP10 | AT1G17720 @ ARAPORT AT1G17720.2 @ TAIR |
+2 | 0.0 | 727 | 366/475 (77%) | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=500 |
| BRACH PP3 | Bradi3g08400.4.p | +2 | 0.0 | 858 | 453/475 (95%) | pacid=32816173 transcript=Bradi3g08400.4 locus=Bradi3g08400 ID=Bradi3g08400.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2048 bp)
>HORVU6Hr1G039910.4 2048 150831_barley_pseudomolecules AGTTGACATCATCTCTGCGATCGAGTTTGACAAATCTGGTGATCATCTTGCCACTGGAGA TAGGGGTGGACGTGTAGTTTTGTTTGAAAGAACTGATGCCAGGGGTAATGCCAGTCGGAC AGAGCTTGAGAGACAAGATTATTCGGTGCCCAGGCATCCTGAGTTCCGCTATAAAACTGA ATTTCAGAGTCATGAACCTGAGTTCGATTACCTAAAGAGTTTGGAAATAGAGGAGAAAAT CAACAAGATCAAGTGGGGCCAAATAGCCAACAATGCACTCTTTATCTTGTCTACAAATGA CAAAACAATCAAGTACTGGAAGGTGCAAGACAAAAAAGTGAAACGAATTTCAGTAATGAA TTTGGATACTTCCCAGAGTGCAGACAATGGGACAACTTCTAGTTCGAGTACCAGTAGCTC TAGAGGCCTTCCTAATGGAGGATCCTCAGAAAAGTCATACAATTATGCAAACAACGATCT GCCATTCCCTCCTGGGGGATATGCATCATTGCGTTTGCCTGTGGTTACAGGCCAAGAGTT AAACCCTGTTGCTAGATGCCGGCGTGTATATGCACACGCCCATGATTACCATATCAATTC CATTTCAAATAATAGTGATGGTGAGACATTCATATCAGCAGATGATCTGCGAATTAATCT GTGGAATTTGGAAATCAACAGTCAGAGCTTTAACATTGTTGATGTGAAGCCTGTAAACAT GGAGGATCTAACTGAGGTGATTACATGTGCGGAGTTCCATCCAACTCACTGTAATACACT AGCCTATAGTAGCTCAAAGGGCGCTATCAGGCTTATTGACCTGCGGCAATCAGCACTGTG TGACAACCATTCTAAGCTATTTGAGGAGCATGAAGCACCTGGATCAAAATCCTTTTTTAC GGAGATAATTGCATCCGTTTCAGATATAAAGTTTGCAAGGGATGGACGGCATATTCTTAG TCGTGATTATATGACTCTCAAGTTATGGGATCTCAACATGGATTCAGGCCCAGTAGCAAC TTTCCAAGTTCATGAACATTTAAGGCCTAAGCTTTGCGATCTATATGAAAATGATTCAAT CTTTGACAAATTTGAATGTTGTCTGAGTGGGGATGGTCATCGTGTTGCGACTGGCTCTTA CAGTAACTTATTTCGTGTTTTTGGTTGTACTCCTGGAAATACCGAGGCAACCACTTTAGA AGCAAGCAGAAACCCTATGAGGCGTCAGGTTGCTAATCCAACAAGGCCTACAAGAACACT GACCTCTTTGACCCGTGCTGTGAGGAGAGGGGGTGAAAATGCAGGAGCCGATGGCAATGG GAATTCTAATGACTTCTCAACAAAGTTACTCCATCTTGCGTGGCACCCAACTGAGAACTC CATTGCGTGTGCTGCTGGAAATAGCTTGTACATGTATTATGCATAGGGAATGTGCTAGAG AAGATTCACTGTTTTTGGTTTGTGCAACGTGAAAGCTTCGGCCTTGCACATGCAACCAGA GAAATGGTGCAGAACATTGTCATCAATTCTGTGATTGGGGGTCGGAAGAGGCGGTTGGCA CCCAGGGGATGGATATCCTCCAACTCCAAGCATAGCAGACTATTTCCTTCTGATTCTTTA GTAAATGTGAAACACAAATTCTAATCGCACGATTGTAGCTGCATGTGTAGCCAAAACACC AGCAGTTGGAGGACAGAGCAGAAGATAGCAAGGCTGATTCTAATTTCACTTGGTCCCAGG AAATATCTGCTTACGGTGGATGTAAGAAATTTTCTTTTCTCTTCATCAAGTGTAATGTAA TGCCGCCTAGCCAGGTTTAACCATCTGCTGTCACCAACGGTGAAACATCTGTGGACATAA ATTATGACTTGTAGCCCCCCCCTCCCCCCTCTATTTGTTGGTGGTCGAAACTTACAATAA GTTTGCAGGTGTGACTCAACTCCTGCTGCATGTGATCGGCTATGACCTAAGTTGTATATG CTACATTTTGCCATGCAAAACTCACAACTAATGATATGGATTCTTGAGTATTCATGTCTG GCTTTTGC