- Transcript HORVU6Hr1G036640.5
- Transcript IDHORVU6Hr1G036640.5
- Gene IDHORVU6Hr1G036640
Barley RTD
Exon Structure of HORVU6Hr1G036640.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 180782519 | 180781911 | - |
| chr6H | 2 | 180782974 | 180782908 | - |
| chr6H | 3 | 180783205 | 180783085 | - |
| chr6H | 4 | 180783571 | 180783362 | - |
| chr6H | 5 | 180783770 | 180783666 | - |
| chr6H | 6 | 180786158 | 180785988 | - |
| chr6H | 7 | 180786706 | 180786233 | - |
| chr6H | 8 | 180787333 | 180786860 | - |
| chr6H | 9 | 180787544 | 180787451 | - |
| chr6H | 10 | 180787695 | 180787634 | - |
| chr6H | 11 | 180787865 | 180787778 | - |
| chr6H | 12 | 180788070 | 180788009 | - |
| chr6H | 13 | 180789166 | 180789050 | - |
| chr6H | 14 | 180789582 | 180789288 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g11820.2 | +2 | 0.0 | 756 | 507/751 (68%) | protein|GTPase-activating protein, putative, expressed |
| TAIR PP10 | AT4G13350 @ ARAPORT AT4G13350.2 @ TAIR |
+2 | 1e-88 | 296 | 221/553 (40%) | Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602 |
| BRACH PP3 | Bradi3g07910.1.p | +2 | 0.0 | 936 | 597/721 (83%) | pacid=32814567 transcript=Bradi3g07910.1 locus=Bradi3g07910 ID=Bradi3g07910.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2949 bp)
>HORVU6Hr1G036640.5 2949 150831_barley_pseudomolecules CCGCCTCCCTCCCGCGGTCCCGCCGCCCGGCGACCGGCTTCAGCCGGTCCACACCCGCAA GTTGACCGCCAGCCGTCGCTCTGCCTTCTTCTCCTCTGCCGGTAAATAAAACCCCACGAC GAGGGAAAAACTTTTTTTCTACTAACACGCGCAGCCCCAGCGAAGCAGCTCAGCGGCGAC AACAAAAGAGGGGACCCTTTCCGTTGGTCGCCACCGCCAACTCGCCTCGGCCCCCGCTCC TCCGCACGCCCGCGCGGGATCTCGCGCTTGCTCCCCCCCGAGGAGGGCTCTCCCGCAGGG TTTGCGGCGGGCGATGGCGAGCCGGGTGAAGGAGGACGAGAAGAACGAGCGGGTAATACG CGGGCTGCTCAAGCTGCCCGCAAACAAGAGGTGCATCAACTGCAACAATTTGGGACCACA ATATGTATGCACAAATTTCTGGACCTTCGTTTGTACCAATTGCAGTGGAGCACACCGAGA GTTCACGCACCGGGTGAAATCTGTTTCCATGGCTAAATTTACTGCACAAGAAGTCACTGC TCTACAAGGAGGAGGAAATGAGCGTGCTAGAGAAATATTTTTCAAGGAATGGGATTCTCA GCGCAATCCATACCCTGACAGCAGTAATACGGACAAATTGAGGAATTTCATCAAATATGT TTACGTGGAACGGCGATATACAGGAGAAAGAAGCTCTGATAGACCACCGAGGGGAAAGGA CGATAAGGATGAACATAGCGAAAATAGAAGATCTGATGGAAATCGGGGTGGTTCAAGAAG TCCACCATATAATGAAAGTTACTCTGACCGTCGGAGTTATAGTGGACGGAGTGATGACAG AAATTCCAGACATTCCTATGGAGAACGTAGTCCTGGCTATGACCAGAATGATTATAAGAA AAGCCCCCGCCACTTTGAAGTTGTCGACGATAGATCTGGGAAAACAACTCCAGTTCAAAG GTTCGAGGACCGCAGGTTTTCTGAACCACGAAAGCCAGAGACTGGGTCTCCAAATTACCA GAGAGAAGCCAATGGATCTAGTCCTCCTGTTGTACGGCCAGTGAGGGAGATATTGGGTGA TGATGCTCCTCAACTTCGGATTGGTGAACCTCCAAAGCCGAATGTAGCCAGACCGATTGA CCCTCCAAAACCAAATGGAGCCAGGACCATTGAACCTCCACCTCAGGCACAGAGGACAGC TACTGCCAGCAGCATTGGTTCTTCCGAGGGGATTTCGGAACAGACGAAGGCAGTAACTCC AGTCAGTTTAATTGATTTTGGTGCAGATCCCGAACCTACTGCATCTGCCCTGCCATCACA GACAGCCCCTACACCCCAGCAGCAGTCAGTTAATGCACAGCCTATTAACACAACAGCGCC ACAACATGTTCTTGAACAAGGCAGAAGTGCTCCATCAGTGAGCGGCGGTGATTGGGCATC TTTTGATGCTTTTGGCCAGCAACAACAAACACCACAATCAGGCAGCACTGTAAATCCGCT TGAGTCTGTGCTTGCACAACTATCATTCTCTGAAACACCCTCTGCCTCCAGTACATCAGC CTTTTCAACTTCTGTTGATCAGCAAGCAAATGGAGGACAGTCATCCATGATAGATCCATC ACATTCTTCATTATTTGGTCCACCCGTTGGAATCTCAGGCAATCAGGCCTCAACAGGAAT GCCCGTCCAAGGATCTGCAGTTCATCAATCTGCTGTGGCTGCCCCTATGGGTGGTCTTCC ATCTCTATTGCCTTCAAATTCTCAAGGAACAAGTGGTATTCAAGAAGCAACGTCTTCTCA TGACAGCAAATCCAGTGGGCGGACAGCACTTCCAGTGGATTTCTTTACTTCACTTTATCC ATCAGCAACTCCAGCAATGCCTGGCTGGCAGAGAGCTCCCCAGTCTGGAATGGGATTTGG CATGCAGTATCCTGCCGGAATGTTGCAGGGAATGCAGTCATATCCTCAGGCAGCATTTTC TCAACCTACATATCAACAGCCTACATATCAGCAACCTATGTATCAGCAACCTACATACCA ACAACCTACGTATCAACAGCCTGTATATCAGCAAAATGCATATCCCCAACCTGCGAAAGC TTCAAACCCTTTTGACCTCGGAAATGAGGCAGCTCCAATTCAAGCTCACATGTCCCTATC TGGACCACTGGGAGCATCAGCAGGCGCTGCTAACCCAACATTAGTTGGTAACTCTAGTTT TGGAGTTCCACCTCAGCAGCCTCAGCAGATGTATCAGCCACCTGTACATCAAAACCATTA CATGATGCAGCATGTTTCAAACAACATGCCTGAGCAGCTACCTAATGGCATGCTTCCAAG GCAACAAGGAGGGGCTGGTTCCCTCGGCGTCGGATATGATCAACAAGCTGCCCCTAGGTA CTCCCAGCCAAGCACCCCACCTTCATATGGTGCTGTCGGTGGAAATCCTTTTGGGTAAAA AAGGCTTATCAAATGTGGACGTACCATGTTACCTGTTTATGGTATCTTATGTATCTTCAG ACCACTGGTGTGTAGTGCCCACTGCCCAGTGAGACCAGAATGCACAAAGCCCTGGAGAAA AATTTGTTTCATATTTACTGGTCATGTGTTCTGTCACTGTAGCTCCGTGTAACTTGGTCT GGGAGGTGGAAGCGACGTGGTGCATAAGCTTCAGGAGCAGTAGTTCGGTGCTTCTAGCCC CTATTTTCTTGTATATTTGTGTTTGGTGTTCTGTATGCGTTGCCTCCGATGTATATTCAC AGAGACCCTATGCCTTGTATGGTTTTTGATTGGGATCTTTCGAGCGGCCCTATCTGATAG TGTACTTAGCTCAGAATGTTACTTTTAGTCATGCTGGGTATTCAATTTTAATGTTTATTG CAATGTCGGACTGAAGGTTGTATAACTGTGGTTAATCAGTTGTTTTGGTCTCACGCTATT GCATTACGG