Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u4423995.1--7689-394Containing




Transcripts from Gene HORVU6Hr1G036640

TranscriptLength(bp)Description
HORVU6Hr1G036640.12963gene=HORVU6Hr1G036640 CDS=319-2463
HORVU6Hr1G036640.22966gene=HORVU6Hr1G036640 CDS=319-2466
HORVU6Hr1G036640.32679gene=HORVU6Hr1G036640 CDS=282-2186
HORVU6Hr1G036640.42656gene=HORVU6Hr1G036640 CDS=264-2165
HORVU6Hr1G036640.52949gene=HORVU6Hr1G036640 CDS=314-2458
HORVU6Hr1G036640.62974gene=HORVU6Hr1G036640 CDS=339-2483
HORVU6Hr1G036640.72958gene=HORVU6Hr1G036640 CDS=320-2467
HORVU6Hr1G036640.82954gene=HORVU6Hr1G036640 CDS=317-2464
HORVU6Hr1G036640.92932gene=HORVU6Hr1G036640 CDS=295-2442
HORVU6Hr1G036640.102912gene=HORVU6Hr1G036640 CDS=1591-2445
HORVU6Hr1G036640.112909gene=HORVU6Hr1G036640 CDS=1591-2442
HORVU6Hr1G036640.123022gene=HORVU6Hr1G036640 CDS=1591-2352
HORVU6Hr1G036640.132296gene=HORVU6Hr1G036640 CDS=442-1833
HORVU6Hr1G036640.142535gene=HORVU6Hr1G036640 CDS=3-2168
HORVU6Hr1G036640.152754gene=HORVU6Hr1G036640 CDS=292-2436
HORVU6Hr1G036640.162702gene=HORVU6Hr1G036640 CDS=2-2218
HORVU6Hr1G036640.172744gene=HORVU6Hr1G036640 CDS=1612-2463
HORVU6Hr1G036640.182408gene=HORVU6Hr1G036640 CDS=361-2166
HORVU6Hr1G036640.192680gene=HORVU6Hr1G036640 CDS=318-2558
HORVU6Hr1G036640.202134gene=HORVU6Hr1G036640 CDS=126-1928
HORVU6Hr1G036640.212655gene=HORVU6Hr1G036640 CDS=302-2449
HORVU6Hr1G036640.222448gene=HORVU6Hr1G036640 CDS=1-2061
HORVU6Hr1G036640.232175gene=HORVU6Hr1G036640 CDS=1-948
HORVU6Hr1G036640.242112gene=HORVU6Hr1G036640 CDS=1-2112
HORVU6Hr1G036640.252068gene=HORVU6Hr1G036640 CDS=277-1965
HORVU6Hr1G036640.261807gene=HORVU6Hr1G036640 CDS=321-650



Exon Structure of HORVU6Hr1G036640


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g11820.2 +1 0.0 461 364/571 (64%) protein|GTPase-activating protein, putative, expressed
TAIR PP10 AT4G13350 @ ARAPORT
AT4G13350.2 @ TAIR		 +2 2e-73 180 79/102 (77%) Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602
BRACH PP3 Bradi3g07910.1.p +1 0.0 598 421/542 (78%) pacid=32814567 transcript=Bradi3g07910.1 locus=Bradi3g07910 ID=Bradi3g07910.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons