- Transcript HORVU6Hr1G021340.6
- Transcript IDHORVU6Hr1G021340.6
- Gene IDHORVU6Hr1G021340
Barley RTD
Exon Structure of HORVU6Hr1G021340.6
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 64215270 | 64214434 | - |
| chr6H | 2 | 64215646 | 64215404 | - |
| chr6H | 3 | 64216574 | 64216523 | - |
| chr6H | 4 | 64217552 | 64217463 | - |
| chr6H | 5 | 64219227 | 64219027 | - |
| chr6H | 6 | 64219387 | 64219387 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g05450.1 | +3 | 1e-68 | 141 | 114/259 (44%) | protein|Homeobox domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g03747.3.p | +3 | 2e-121 | 317 | 172/262 (66%) | pacid=32817691 transcript=Bradi3g03747.3 locus=Bradi3g03747 ID=Bradi3g03747.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1424 bp)
>HORVU6Hr1G021340.6 1424 150831_barley_pseudomolecules GGAAATGTTTGGAAAGCTGACTGACAATGAAAAGCAGAGTGAAGATGAAGATTGGGGTAC TAGTAATAAGAGAAAGAAAAGAAGAGTGGATTCAGCTGGTGTTGGAGTTAAGTCTGCCGA GGGTTTCTCAGATGTAAAATCAAATGAGAAAGTCCAACCGCAGAGGAGAAAACTTTTCAG AATTCCTCCTGAGGCAGTTCAGGTACTACGCAAATCTTTTGCTGAAAGCGAGCTTCCAAC CCGGGAGGTGAAAGAGAATCTCTCAACAGAATTGGGTATTTCATTTGAAAAGGATTGACA AGTGGTTCAAAAATACAAGGTGTGCTGCTCTCAGAGATCGGAAGGCTGAAGGAAATAGCC GTGTTGCTGGCCCCAGCAAAAGATCGAGACGGAGTGCAGGGAAATCTGGAAGTTCAGGCA AGGTTGATTCAGTGGACAATTCATATCTTCTTCCCGCGTCTGAAATCATCAGTGTACCTA CACATCCACAAGGGATTCCTGAGAGGAAGCCCGAATCAACCAGTAGAACTGTGAGGGGGC GGGTACACGATAAAGGAGCTCCCTTGTGCCTGACCGCCAAAGTCAAGGAGAGTACATCAC CTACAACCAAGCCTGTCTTGAACACACACCCTACTCATCTAGCAGATCGCATCATCAACA CTGAGCATAGAGCTGTCTCTCAGGAGGACACAGGGCCCTCCGATGACCCTTTCTTCGATG CGATCCTATCCTATCCCACCATCAACACAAGCGACAGAGCTGCCTCTCGGGATGATCCGG TGGCCTTCGAGGACGACCCTTTCCTGGACGTGATGCTAGCAAACCGCGACATCTATACCG AGGAGAGAGTCGCTTCTCACGAGGACGTGAGGCGGACTTCCAGCGACCAGCCTTTCCTGG ATGTGATCCAGAACGTGTGCGGACTCGAGCATAGGCTGCAGAGACTGAAGGGGGACATGC TATCATCATCAGCAGCACCAGGCGGCGCTGGAACCACAGAGCGCGACCTGCAGAGCCAAC TAGTGGTTCTCGTGCCAACCGCCGAGCTGAAGGACAAATCACAGCCTGGCATCTGAAATT CCGGGTGCGGATGCGACGCTCCGTTTGCGTGTTGTCGATAGGAGTTACTAAAACATATAG AAGAAATAGTGTAGAGAAGGAGAAGAGAAAGAAAAGTAGTGGCTCTAGTCTAGGGTTCTA GCCGACAAGGGGCCTCAACCGTGGTCGTTACTGTGTGTCACATTGAAGTGCGTCTTCGTT GTTACTTAGTATACAAGGGCAGTTGTTACTGGTTTTAATGGGTTGGAGTTATATACTTTT CGGGGTTCAAAATGTTTGGTTTGGAACCATGTCGATGTGCAAACTTTGAGTAACCTCAAT TCTCATTTTTTTTCCCATTTTACTAAAAAAAATCAGTTTTACCT