Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u4323898.8--8870108Partial-Overlap




Transcripts from Gene HORVU6Hr1G021340

TranscriptLength(bp)Description
HORVU6Hr1G021340.11102gene=HORVU6Hr1G021340 CDS=1-744
HORVU6Hr1G021340.22755gene=HORVU6Hr1G021340 CDS=142-2397
HORVU6Hr1G021340.32731gene=HORVU6Hr1G021340 CDS=142-2373
HORVU6Hr1G021340.42912gene=HORVU6Hr1G021340 CDS=147-1385
HORVU6Hr1G021340.52641gene=HORVU6Hr1G021340 CDS=374-2290
HORVU6Hr1G021340.61424gene=HORVU6Hr1G021340 CDS=2-298
HORVU6Hr1G021340.72748gene=HORVU6Hr1G021340 CDS=145-1860
HORVU6Hr1G021340.82724gene=HORVU6Hr1G021340 CDS=135-2390
HORVU6Hr1G021340.92674gene=HORVU6Hr1G021340 CDS=136-2367
HORVU6Hr1G021340.102836gene=HORVU6Hr1G021340 CDS=140-1378
HORVU6Hr1G021340.112698gene=HORVU6Hr1G021340 CDS=221-2452
HORVU6Hr1G021340.122623gene=HORVU6Hr1G021340 CDS=142-1575
HORVU6Hr1G021340.13759gene=HORVU6Hr1G021340 CDS=69-272
HORVU6Hr1G021340.141735gene=HORVU6Hr1G021340 CDS=30-1574
HORVU6Hr1G021340.151674gene=HORVU6Hr1G021340 CDS=141-1673
HORVU6Hr1G021340.161832gene=HORVU6Hr1G021340 CDS=140-1378
HORVU6Hr1G021340.17425gene=HORVU6Hr1G021340 CDS=3-269
HORVU6Hr1G021340.181527gene=HORVU6Hr1G021340 CDS=1-1527



Exon Structure of HORVU6Hr1G021340


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g05450.1 +3 0.0 702 449/803 (56%) protein|Homeobox domain containing protein, expressed
TAIR PP10 AT4G29940 @ ARAPORT
AT4G29940.2 @ TAIR		 +3 4e-46 178 89/180 (49%) Symbols: PRHA | pathogenesis related homeodomain protein A | chr4:14648346-14652710 REVERSE LENGTH=769
BRACH PP3 Bradi3g03747.3.p +3 0.0 989 557/803 (69%) pacid=32817691 transcript=Bradi3g03747.3 locus=Bradi3g03747 ID=Bradi3g03747.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons