- Transcript HORVU6Hr1G021340.4
- Transcript IDHORVU6Hr1G021340.4
- Gene IDHORVU6Hr1G021340
Barley RTD
Exon Structure of HORVU6Hr1G021340.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 64215270 | 64214431 | - |
| chr6H | 2 | 64215646 | 64215404 | - |
| chr6H | 3 | 64216573 | 64216523 | - |
| chr6H | 4 | 64217552 | 64217463 | - |
| chr6H | 5 | 64219737 | 64219027 | - |
| chr6H | 6 | 64219961 | 64219846 | - |
| chr6H | 7 | 64220925 | 64220808 | - |
| chr6H | 8 | 64221173 | 64221008 | - |
| chr6H | 9 | 64222301 | 64221836 | - |
| chr6H | 10 | 64223290 | 64223180 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g05450.1 | +3 | 0.0 | 702 | 449/803 (56%) | protein|Homeobox domain containing protein, expressed |
| TAIR PP10 | AT4G29940 @ ARAPORT AT4G29940.2 @ TAIR |
+3 | 4e-46 | 178 | 89/180 (49%) | Symbols: PRHA | pathogenesis related homeodomain protein A | chr4:14648346-14652710 REVERSE LENGTH=769 |
| BRACH PP3 | Bradi3g03747.3.p | +3 | 0.0 | 989 | 557/803 (69%) | pacid=32817691 transcript=Bradi3g03747.3 locus=Bradi3g03747 ID=Bradi3g03747.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2912 bp)
>HORVU6Hr1G021340.4 2912 150831_barley_pseudomolecules NNNNNNNGCCCCCGCCGGCTTCCAATTGGAGGAATTCGGATCTCCTCCCCCTCCTCCTCC TCCTCTGCTGGGCTTGCTTGGAGCGGAGATCCACCGGGGCCTCAGCTCTCGGACTCAGTC GGATGTGATACTATCAAGTTCTGACAATGAATAATTCAGACAAGAAGTCGGTATGCTCCA TTCCTAGAAGATCATCAGAACGTAGGAAACCGTCCTCTTCTGAGTTGGTTTCTTCAGCAA AAAGGCCAACTCGCCACAACACCTCCAGCAGTTATAAGCCAGATCATTGTTCTCCTCCCA AGAGAACAGTAAGAACAGTCAGGAATGTTAATCTGGCAAAATATGTAAAGAACAAGTATT ATCGTAGTCCTCTGAGCAAGCGGCAGGCTTCAAATGTTGCTACTGGAAAAACTGCAACAG GACCAGTCAGGAGGAGGAACCGGAAACGGAGAAGGCACAACACTGATTGTGACGAGGCAA GTCGCATGGAAAGAAGGGCGAGCTATTTGCTGGTCAAAATAAAAACGGAGCAGAATTTAA TAGATGCATACTCTGGAGATGGCTGGAATGGGCACAGCCGAGAGAAATTAAAGCCAGATA AGGAGCTACAGCGTGCTAAGAAACAGATCATTAAATGCAAAATTGCTATCCGTGATATTA TCCATCAACTTGATTTGTATAGTTCAAGTGGGAGCATGGAAGATTCCGTGATGCCTCCAG ATGAGTCTGTTAACCCTGATAATACCATATGTTCAAGATGCAAATCTCCTGAATCAGTTC CCAACAATAAATTTATCTTCTGTGAAGGGCCCTGCAAAATGGCGTACCATCAGAAATGTT CAGAACCTCCTCTAGACAAAAGTCTTCCTACTGGTGGTCCTGGATGGCTTTGTAAATTCT GTTTGTGCAAGATGAAAATTTTAGAAGCTGTTAATGCACATTTGGGAATGAGCCTTACAG TGATGTGTCCCTCTAAAGATATTTTTAAGGAAGCAACTGAACAGATGGACTCTGAGGATG GACTAGGAGAGGATTGGTTATCTGAGTATTCAGGTGATGAGGACTATGACCCTGAAGAAA ATGACTTCACAAGCAGCAGCCTGGATAGTGGTGAAGAAAGGATATCTGATCAGTCCAATT GTTCAGGAAGTCCGCTTTATTCTCCAAACGATGATATTCCAGGCTTTATATCAGCAGATT TCACTGATGCGGAAGGATTCTACCACACCAATTCAAATTTAGGAATTGATTCTGGGGATG ATGATGCTGCCGAGATGCTTACCTACCAAAGGCCAAAGAAAGAGGTTGATTATAAAAGAC TTAATGAGGTGTATTTTGCTAAGCAGAACATTTTTTATACTGCAATTCTAGGAACTGCAT TTTGAGTTAGCCATGTGTTGTGTGTTAGTTGCACCTTGAGTAAGTTGTTCATCAGCATCA AGTTGGTTCAAAAGGTTGGGACTTTAACTGCTTTTCACCCTTCACAGGAAATGTTTGGAA AGCTGACTGACAATGAAAAGCAGAGTGAAGATGAAGATTGGGGTACTAGTAATAAGAGAA AGAAAAGAAGAGTGGATTCAGCTGGTGTTGGAGTTAAGTCTGCCGAGGGTTTCTCAGATG TAAAATCAAATGAGAAAGTCCAACCGCAGAGGAGAAAACTTTTCAGAATTCCTCCTGAGG CAGTTCAGGTACTACGCAAATCTTTTGCTGAAAGCGAGCTTCCAACCCGGGAGGTGAAAG AGAATCTCTCAACAGAATTGGGTATTTCATTTGAAAAGATTGACAAGTGGTTCAAAAATA CAAGGTGTGCTGCTCTCAGAGATCGGAAGGCTGAAGGAAATAGCCGTGTTGCTGGCCCCA GCAAAAGATCGAGACGGAGTGCAGGGAAATCTGGAAGTTCAGGCAAGGTTGATTCAGTGG ACAATTCATATCTTCTTCCCGCGTCTGAAATCATCAGTGTACCTACACATCCACAAGGGA TTCCTGAGAGGAAGCCCGAATCAACCAGTAGAACTGTGAGGGGGCGGGTACACGATAAAG GAGCTCCCTTGTGCCTGACCGCCAAAGTCAAGGAGAGTACATCACCTACAACCAAGCCTG TCTTGAACACACACCCTACTCATCTAGCAGATCGCATCATCAACACTGAGCATAGAGCTG TCTCTCAGGAGGACACAGGGCCCTCCGATGACCCTTTCTTCGATGCGATCCTATCCTATC CCACCATCAACACAAGCGACAGAGCTGCCTCTCGGGATGATCCGGTGGCCTTCGAGGACG ACCCTTTCCTGGACGTGATGCTAGCAAACCGCGACATCTATACCGAGGAGAGAGTCGCTT CTCACGAGGACGTGAGGCGGACTTCCAGCGACCAGCCTTTCCTGGATGTGATCCAGAACG TGTGCGGACTCGAGCATAGGCTGCAGAGACTGAAGGGGGACATGCTATCATCATCAGCAG CACCAGGCGGCGCTGGAACCACAGAGCGCGACCTGCAGAGCCAACTAGTGGTTCTCGTGC CAACCGCCGAGCTGAAGGACAAATCACAGCCTGGCATCTGAAATTCCGGGTGCGGATGCG ACGCTCCGTTTGCGTGTTGTCGATAGGAGTTACTAAAACATATAGAAGAAATAGTGTAGA GAAGGAGAAGAGAAAGAAAAGTAGTGGCTCTAGTCTAGGGTTCTAGCCGACAAGGGGCCT CAACCGTGGTCGTTACTGTGTGTCACATTGAAGTGCGTCTTCGTTGTTACTTAGTATACA AGGGCAGTTGTTACTGGTTTTAATGGGTTGGAGTTATATACTTTTCGGGGTTCAAAATGT TTGGTTTGGAACCATGTCGATGTGCAAACTTTGAGTAACCTCAATTCTCATTTTTTTTCC CATTTTACTAAAAAAAATCAGTTTTACCTGCA