- Transcript HORVU6Hr1G021340.16
- Transcript IDHORVU6Hr1G021340.16
- Gene IDHORVU6Hr1G021340
Barley RTD
Exon Structure of HORVU6Hr1G021340.16
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 64216573 | 64216514 | - |
| chr6H | 2 | 64217553 | 64217463 | - |
| chr6H | 3 | 64219737 | 64219027 | - |
| chr6H | 4 | 64219961 | 64219846 | - |
| chr6H | 5 | 64220925 | 64220808 | - |
| chr6H | 6 | 64221173 | 64221008 | - |
| chr6H | 7 | 64222301 | 64221836 | - |
| chr6H | 8 | 64223283 | 64223180 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g05450.1 | +2 | 6e-177 | 518 | 310/523 (59%) | protein|Homeobox domain containing protein, expressed |
| TAIR PP10 | AT4G29940 @ ARAPORT AT4G29940.2 @ TAIR |
+2 | 2e-47 | 178 | 89/180 (49%) | Symbols: PRHA | pathogenesis related homeodomain protein A | chr4:14648346-14652710 REVERSE LENGTH=769 |
| BRACH PP3 | Bradi3g03747.3.p | +2 | 0.0 | 638 | 364/521 (70%) | pacid=32817691 transcript=Bradi3g03747.3 locus=Bradi3g03747 ID=Bradi3g03747.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1832 bp)
>HORVU6Hr1G021340.16 1832 150831_barley_pseudomolecules GCCCCCGCCGGCTTCCAATTGGAGGAATTCGGATCTCCTCCCCCTCCTCCTCCTCCTCTG CTGGGCTTGCTTGGAGCGGAGATCCACCGGGGCCTCAGCTCTCGGACTCAGTCGGATGTG ATACTATCAAGTTCTGACAATGAATAATTCAGACAAGAAGTCGGTATGCTCCATTCCTAG AAGATCATCAGAACGTAGGAAACCGTCCTCTTCTGAGTTGGTTTCTTCAGCAAAAAGGCC AACTCGCCACAACACCTCCAGCAGTTATAAGCCAGATCATTGTTCTCCTCCCAAGAGAAC AGTAAGAACAGTCAGGAATGTTAATCTGGCAAAATATGTAAAGAACAAGTATTATCGTAG TCCTCTGAGCAAGCGGCAGGCTTCAAATGTTGCTACTGGAAAAACTGCAACAGGACCAGT CAGGAGGAGGAACCGGAAACGGAGAAGGCACAACACTGATTGTGACGAGGCAAGTCGCAT GGAAAGAAGGGCGAGCTATTTGCTGGTCAAAATAAAAACGGAGCAGAATTTAATAGATGC ATACTCTGGAGATGGCTGGAATGGGCACAGCCGAGAGAAATTAAAGCCAGATAAGGAGCT ACAGCGTGCTAAGAAACAGATCATTAAATGCAAAATTGCTATCCGTGATATTATCCATCA ACTTGATTTGTATAGTTCAAGTGGGAGCATGGAAGATTCCGTGATGCCTCCAGATGAGTC TGTTAACCCTGATAATACCATATGTTCAAGATGCAAATCTCCTGAATCAGTTCCCAACAA TAAATTTATCTTCTGTGAAGGGCCCTGCAAAATGGCGTACCATCAGAAATGTTCAGAACC TCCTCTAGACAAAAGTCTTCCTACTGGTGGTCCTGGATGGCTTTGTAAATTCTGTTTGTG CAAGATGAAAATTTTAGAAGCTGTTAATGCACATTTGGGAATGAGCCTTACAGTGATGTG TCCCTCTAAAGATATTTTTAAGGAAGCAACTGAACAGATGGACTCTGAGGATGGACTAGG AGAGGATTGGTTATCTGAGTATTCAGGTGATGAGGACTATGACCCTGAAGAAAATGACTT CACAAGCAGCAGCCTGGATAGTGGTGAAGAAAGGATATCTGATCAGTCCAATTGTTCAGG AAGTCCGCTTTATTCTCCAAACGATGATATTCCAGGCTTTATATCAGCAGATTTCACTGA TGCGGAAGGATTCTACCACACCAATTCAAATTTAGGAATTGATTCTGGGGATGATGATGC TGCCGAGATGCTTACCTACCAAAGGCCAAAGAAAGAGGTTGATTATAAAAGACTTAATGA GGTGTATTTTGCTAAGCAGAACATTTTTTATACTGCAATTCTAGGAACTGCATTTTGAGT TAGCCATGTGTTGTGTGTTAGTTGCACCTTGAGTAAGTTGTTCATCAGCATCAAGTTGGT TCAAAAGGTTGGGACTTTAACTGCTTTTCACCCTTCACAGGAAATGTTTGGAAAGCTGAC TGACAATGAAAAGCAGAGTGAAGATGAAGATTGGGGTACTAGTAATAAGAGAAAGAAAAG AAGAGTGGATTCAGCTGGTGTTGGAGTTAAGTCTGCCGAGGGTTTCTCAGATGTAAAATC AAATGAGAAAGTCCAACCGCAGAGGAGAAAACTTTTCAGAATTCCTCCTGAGGCAGTTCA GGGTACTACGCAAATCTTTTGCTGAAAGCGAGCTTCCAACCCGGGAGGTGAAAGAGAATC TCTCAACAGAATTGGGTATTTCATTTGAAAAGATTGACAAGTGGTTCAAAAATACAAGGT GTGCTGCTCTCAGAGATCGGAAGGCATGCATT