- Transcript HORVU6Hr1G021340.15
- Transcript IDHORVU6Hr1G021340.15
- Gene IDHORVU6Hr1G021340
Barley RTD
Exon Structure of HORVU6Hr1G021340.15
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 64216573 | 64216513 | - |
| chr6H | 2 | 64217552 | 64217463 | - |
| chr6H | 3 | 64219227 | 64219027 | - |
| chr6H | 4 | 64219737 | 64219387 | - |
| chr6H | 5 | 64219961 | 64219846 | - |
| chr6H | 6 | 64220925 | 64220808 | - |
| chr6H | 7 | 64221173 | 64221008 | - |
| chr6H | 8 | 64222301 | 64221836 | - |
| chr6H | 9 | 64223284 | 64223180 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g05450.1 | +3 | 0.0 | 634 | 353/512 (69%) | protein|Homeobox domain containing protein, expressed |
| TAIR PP10 | AT4G29940 @ ARAPORT AT4G29940.2 @ TAIR |
+3 | 4e-75 | 253 | 163/429 (38%) | Symbols: PRHA | pathogenesis related homeodomain protein A | chr4:14648346-14652710 REVERSE LENGTH=769 |
| BRACH PP3 | Bradi3g03747.3.p | +3 | 0.0 | 751 | 406/509 (80%) | pacid=32817691 transcript=Bradi3g03747.3 locus=Bradi3g03747 ID=Bradi3g03747.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1674 bp)
>HORVU6Hr1G021340.15 1674 150831_barley_pseudomolecules NGCCCCCGCCGGCTTCCAATTGGAGGAATTCGGATCTCCTCCCCCTCCTCCTCCTCCTCT GCTGGGCTTGCTTGGAGCGGAGATCCACCGGGGCCTCAGCTCTCGGACTCAGTCGGATGT GATACTATCAAGTTCTGACAATGAATAATTCAGACAAGAAGTCGGTATGCTCCATTCCTA GAAGATCATCAGAACGTAGGAAACCGTCCTCTTCTGAGTTGGTTTCTTCAGCAAAAAGGC CAACTCGCCACAACACCTCCAGCAGTTATAAGCCAGATCATTGTTCTCCTCCCAAGAGAA CAGTAAGAACAGTCAGGAATGTTAATCTGGCAAAATATGTAAAGAACAAGTATTATCGTA GTCCTCTGAGCAAGCGGCAGGCTTCAAATGTTGCTACTGGAAAAACTGCAACAGGACCAG TCAGGAGGAGGAACCGGAAACGGAGAAGGCACAACACTGATTGTGACGAGGCAAGTCGCA TGGAAAGAAGGGCGAGCTATTTGCTGGTCAAAATAAAAACGGAGCAGAATTTAATAGATG CATACTCTGGAGATGGCTGGAATGGGCACAGCCGAGAGAAATTAAAGCCAGATAAGGAGC TACAGCGTGCTAAGAAACAGATCATTAAATGCAAAATTGCTATCCGTGATATTATCCATC AACTTGATTTGTATAGTTCAAGTGGGAGCATGGAAGATTCCGTGATGCCTCCAGATGAGT CTGTTAACCCTGATAATACCATATGTTCAAGATGCAAATCTCCTGAATCAGTTCCCAACA ATAAATTTATCTTCTGTGAAGGGCCCTGCAAAATGGCGTACCATCAGAAATGTTCAGAAC CTCCTCTAGACAAAAGTCTTCCTACTGGTGGTCCTGGATGGCTTTGTAAATTCTGTTTGT GCAAGATGAAAATTTTAGAAGCTGTTAATGCACATTTGGGAATGAGCCTTACAGTGATGT GTCCCTCTAAAGATATTTTTAAGGAAGCAACTGAACAGATGGACTCTGAGGATGGACTAG GAGAGGATTGGTTATCTGAGTATTCAGGTGATGAGGACTATGACCCTGAAGAAAATGACT TCACAAGCAGCAGCCTGGATAGTGGTGAAGAAAGGATATCTGATCAGTCCAATTGTTCAG GAAGTCCGCTTTATTCTCCAAACGATGATATTCCAGGCTTTATATCAGCAGATTTCACTG ATGCGGAAGGATTCTACCACACCAATTCAAATTTAGGAATTGATTCTGGGGATGATGATG CTGCCGAGATGCTTACCTACCAAAGGCCAAAGAAAGAGGTTGATTATAAAAGACTTAATG AGGAAATGTTTGGAAAGCTGACTGACAATGAAAAGCAGAGTGAAGATGAAGATTGGGGTA CTAGTAATAAGAGAAAGAAAAGAAGAGTGGATTCAGCTGGTGTTGGAGTTAAGTCTGCCG AGGGTTTCTCAGATGTAAAATCAAATGAGAAAGTCCAACCGCAGAGGAGAAAACTTTTCA GAATTCCTCCTGAGGCAGTTCAGGTACTACGCAAATCTTTTGCTGAAAGCGAGCTTCCAA CCCGGGAGGTGAAAGAGAATCTCTCAACAGAATTGGGTATTTCATTTGAAAAGATTGACA AGTGGTTCAAAAATACAAGGTGTGCTGCTCTCAGAGATCGGAAGGCATGCATTT