Transcript Data
Barley RTD
Links



Exon Structure of HORVU6Hr1G021340.1

ChromosomeExonStartStopDirection
chr6H16421527064214424-
chr6H26421565864215404-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7None-----
TAIR PP10None-----
BRACH PP3 Bradi3g03747.3.p +1 1e-86 277 155/243 (64%) pacid=32817691 transcript=Bradi3g03747.3 locus=Bradi3g03747 ID=Bradi3g03747.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (1102 bp)

>HORVU6Hr1G021340.1 1102 150831_barley_pseudomolecules
TGCTGTCTGCAGGCTGAAGGAAATAGCCGTGTTGCTGGCCCCAGCAAAAGATCGAGACGG
AGTGCAGGGAAATCTGGAAGTTCAGGCAAGGTTGATTCAGTGGACAATTCATATCTTCTT
CCCGCGTCTGAAATCATCAGTGTACCTACACATCCACAAGGGATTCCTGAGAGGAAGCCC
GAATCAACCAGTAGAACTGTGAGGGGGCGGGTACACGATAAAGGAGCTCCCTTGTGCCTG
ACCGCCAAAGTCAAGGAGAGTACATCACCTACAACCAAGCCTGTCTTGAACACACACCCT
ACTCATCTAGCAGATCGCATCATCAACACTGAGCATAGAGCTGTCTCTCAGGAGGACACA
GGGCCCTCCGATGACCCTTTCTTCGATGCGATCCTATCCTATCCCACCATCAACACAAGC
GACAGAGCTGCCTCTCGGGATGATCCGGTGGCCTTCGAGGACGACCCTTTCCTGGACGTG
ATGCTAGCAAACCGCGACATCTATACCGAGGAGAGAGTCGCTTCTCACGAGGACGTGAGG
CGGACTTCCAGCGACCAGCCTTTCCTGGATGTGATCCAGAACGTGTGCGGACTCGAGCAT
AGGCTGCAGAGACTGAAGGGGGACATGCTATCATCATCAGCAGCACCAGGCGGCGCTGGA
ACCACAGAGCGCGACCTGCAGAGCCAACTAGTGGTTCTCGTGCCAACCGCCGAGCTGAAG
GACAAATCACAGCCTGGCATCTGAAATTCCGGGTGCGGATGCGACGCTCCGTTTGCGTGT
TGTCGATAGGAGTTACTAAAACATATAGAAGAAATAGTGTAGAGAAGGAGAAGAGAAAGA
AAAGTAGTGGCTCTAGTCTAGGGTTCTAGCCGACAAGGGGCCTCAACCGTGGTCGTTACT
GTGTGTCACATTGAAGTGCGTCTTCGTTGTTACTTAGTATACAAGGGCAGTTGTTACTGG
TTTTAATGGGTTGGAGTTATATACTTTTCGGGGTTCAAAATGTTTGGTTTGGAACCATGT
CGATGTGCAAACTTTGAGTAACCTCAATTCTCATTTTTTTTCCCATTTTACTAAAAAAAA
TCAGTTTTACCTGCAAGTGAAA