- Transcript HORVU6Hr1G015670.24
- Transcript IDHORVU6Hr1G015670.24
- Gene IDHORVU6Hr1G015670
Barley RTD
Exon Structure of HORVU6Hr1G015670.24
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 34892153 | 34891775 | + |
| chr6H | 2 | 34892456 | 34892398 | + |
| chr6H | 3 | 34893434 | 34893231 | + |
| chr6H | 4 | 34894059 | 34893848 | + |
| chr6H | 5 | 34894525 | 34894361 | + |
| chr6H | 6 | 34895187 | 34894927 | + |
| chr6H | 7 | 34896103 | 34895891 | + |
| chr6H | 8 | 34896414 | 34896192 | + |
| chr6H | 9 | 34897225 | 34896755 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g03690.1 | +3 | 0.0 | 565 | 262/307 (85%) | protein|beta-amylase, putative, expressed |
| TAIR PP10 | AT5G45300 @ ARAPORT AT5G45300.2 @ TAIR |
+3 | 2e-164 | 388 | 181/289 (63%) | Symbols: BMY2, BAM8 | beta-amylase 2 | chr5:18353636-18356696 FORWARD LENGTH=687 |
| BRACH PP3 | Bradi3g02800.2.p | +3 | 0.0 | 580 | 271/309 (88%) | pacid=32818287 transcript=Bradi3g02800.2 locus=Bradi3g02800 ID=Bradi3g02800.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2187 bp)
>HORVU6Hr1G015670.24 2187 150831_barley_pseudomolecules CTCACCTAGCAGATGTTCGGATTTTGCTTGCTGGAGCAAAATCCACTTTCCGTACGATAA TTCAAAACACTGTGAATGACAAATGTATCGATTTCACAAGAAATGATTCGCATTGCGACC ATAACACATTCATGTTCTTATTTATGTGCAGCAGGGTGCTTTCCAGGCCACTTCTCTGGA AACCCCAGTTTTTACCAACTCTCTGAACAGCTATGCCGTTGGGACGCCATTAGATTCCCA GGCTTCAGCCCTACAAACAGATGATAGCCTGTCACCGTCGTCATTGGACTCAGTCGTGGT GGCAGAGCAATGCATAAAGAATGAGAGCTTTGGGAATTCAAGTTCAGCCAATTCTTTGAA CTGTATGGGTAGTGATCAGCTATTGAGAGCATCAGCAGTATGGGCGGGTGATTACACGAA AACTCCATATATACCATTATGGGCATTATCAATTGTTATTGCCAACTGGTTGATCCTGAG GCTGTACGTGCTGAACTAAGGCATCTGAAATCTTTGAATGTTGATGGAGTTATTGTTGAC TGTTGGTGGGGGATTGTAGAAGCCTGGACTCCTCAAAAGTATGAATGGTCTGGCTACAGG GACCTTTTTGGTATCATTAAAGAGTTCAAGCTAAAAGTTCAGGTTGTGTTATCATTTCAT GGGTCTGGGGAGTGTGGATCTGGTCCTGTGTTAATTGCTCTTCCTAGGTGGGTAATGGAA ATTGCACAAGAGAACCAAGATATATTTTTTACCGATCGAGAAGGTAGGAGGAATACAGAA TGCCTCTCCTGGGGAATTGACAAAGAGCGTGTCCTTCGAGGGAGAACTGGCATCGAGGTA TTGGGTCATCCTTGGTTTATTTTGATTTCATGAGGAGCTTTCATATGGAATTCAGAACCC TATCTGAAGAGGGTCTTATTTCTGCTATTGAGATTGGATTGGGTGCTTCTGGAGAGCTAA GATACCCTTCGTGTTCAGAAAAAATGGGCTGGAGATATCCTGGTATTGGTGAGTTTCAGT GTTATGACAGGTATATGCAAAAGAACCTACGGCAATCAGCCTTGACACGGGGGCATTTGT TTTGGGCCCGTGGGCCTGATAATGCTGGCTACTATAATTCAAGGTCACACGAGACTGGCT TTTTTTGTGACGGAGGTGATTATGACAGCTACTATGGGCGGTTCTTCCTTAATTGGTATT CTGGAATCCTTATAGATCATGTGGATCAGGTGCTCTCACTTGCTACTCTTGCATTTGATG GAGCAGCAGTTGTGGTGAAGATCCCCTCCATCTATTGGTGGTACAGAACTGCAAGCCATG CTGCAGAGCTTACTGCAGGATTCTACAACCCTACAAATCGAGATGGATACTCTCCAGTTT TCAGAATGCTCAAGAAGCATTCCATAATTCTTAAAGTGGTTTGTTATGGCCCAGAATTTA CAGTTCAGGAGAATGATGAAGCACTTGCTGATCCAGAAGGTTTAACCTGGCAGGTTATGA ACGCAGCATGGGATCATGGTCTATCTGTAAGTGTAGAGAGTGCTCTTCCATGTCTTGACG TGGACATGTACTCTCGGATCCTTGACACAGCAAAGCCGAGGAATGATCCTGACCGACACC ATCTCTCATTCTTTGCATACCGTCAGCGAACTCCATTCCTTTTGCAGAGAGATGTGTGCT TCTCAGAGCTTGAGACCTTCGTAAAGTGTATGCACGGGGAGGCTATCCAGAACTTTGTAG ATTGAACTTGCTTTGGCGACGCATTCCCTGTTATGTTGCAGCTCGCGTTCTGCAAATTTC CGGATTCCCTGCGTAGCTATCACAAGCTTTAACTCATATTGCTGATTGCTGCGTTCCGGC CATCCCCGCCTTTGCTATGGGTCAGCTAACCAGATGGCACTGAAACTGTTGTGCTGGTGG TGGGCAAGGATTAGCATCCCTTATCTGTGGTACAGGGCTGATAGTTCAGCAAGTTTTTAC CGTGGTGTGACCTAGCTTGGGCTAGAAAGATGGAAAGAATGGCGATGTATATATCTAATA GTACTACACTATCATGCTCTAAGATGCAAAGAAAGCGTCTGAATTCTCCATGGTAAGCTG CTCGATGACAAGTGCTTGCAGTGGGTTTCCGAGGGATTCCTTGAACTCGCTTTTCCCTTT CTATTTTCCTTTGAACCTTATTGGGAC