Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u4283597.9++5679400Partial-Overlap




Transcripts from Gene HORVU6Hr1G015670

TranscriptLength(bp)Description
HORVU6Hr1G015670.12386gene=HORVU6Hr1G015670 CDS=960-2225
HORVU6Hr1G015670.21973gene=HORVU6Hr1G015670 CDS=2-1951
HORVU6Hr1G015670.31715gene=HORVU6Hr1G015670 CDS=1-1713
HORVU6Hr1G015670.41753gene=HORVU6Hr1G015670 CDS=1-1734
HORVU6Hr1G015670.52157gene=HORVU6Hr1G015670 CDS=3-1658
HORVU6Hr1G015670.62283gene=HORVU6Hr1G015670 CDS=605-1894
HORVU6Hr1G015670.72300gene=HORVU6Hr1G015670 CDS=1036-1911
HORVU6Hr1G015670.82089gene=HORVU6Hr1G015670 CDS=785-1660
HORVU6Hr1G015670.92160gene=HORVU6Hr1G015670 CDS=1-1620
HORVU6Hr1G015670.102040gene=HORVU6Hr1G015670 CDS=314-1603
HORVU6Hr1G015670.112149gene=HORVU6Hr1G015670 CDS=745-1620
HORVU6Hr1G015670.122106gene=HORVU6Hr1G015670 CDS=760-1635
HORVU6Hr1G015670.131360gene=HORVU6Hr1G015670 CDS=1-759
HORVU6Hr1G015670.142098gene=HORVU6Hr1G015670 CDS=761-1636
HORVU6Hr1G015670.152771gene=HORVU6Hr1G015670 CDS=1-960
HORVU6Hr1G015670.162146gene=HORVU6Hr1G015670 CDS=1-1617
HORVU6Hr1G015670.172160gene=HORVU6Hr1G015670 CDS=756-1631
HORVU6Hr1G015670.182188gene=HORVU6Hr1G015670 CDS=304-1593
HORVU6Hr1G015670.192479gene=HORVU6Hr1G015670 CDS=3-1586
HORVU6Hr1G015670.202124gene=HORVU6Hr1G015670 CDS=731-1606
HORVU6Hr1G015670.212120gene=HORVU6Hr1G015670 CDS=1-1602
HORVU6Hr1G015670.222302gene=HORVU6Hr1G015670 CDS=908-1783
HORVU6Hr1G015670.232285gene=HORVU6Hr1G015670 CDS=387-1766
HORVU6Hr1G015670.242187gene=HORVU6Hr1G015670 CDS=870-1745
HORVU6Hr1G015670.252116gene=HORVU6Hr1G015670 CDS=732-1607
HORVU6Hr1G015670.261881gene=HORVU6Hr1G015670 CDS=1-1371
HORVU6Hr1G015670.271823gene=HORVU6Hr1G015670 CDS=449-1324



Exon Structure of HORVU6Hr1G015670


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g03690.1 +1 2e-155 396 184/217 (85%) protein|beta-amylase, putative, expressed
TAIR PP10 AT5G45300 @ ARAPORT
AT5G45300.1 @ TAIR		 +1 9e-115 324 167/293 (57%) Symbols: BMY2, BAM8 | beta-amylase 2 | chr5:18353636-18356696 FORWARD LENGTH=689
BRACH PP3 Bradi3g02800.3.p +1 0.0 533 267/294 (91%) pacid=32818288 transcript=Bradi3g02800.3 locus=Bradi3g02800 ID=Bradi3g02800.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons