- Transcript HORVU6Hr1G015670.15
- Transcript IDHORVU6Hr1G015670.15
- Gene IDHORVU6Hr1G015670
Barley RTD
Exon Structure of HORVU6Hr1G015670.15
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 34891732 | 34891709 | + |
| chr6H | 2 | 34892153 | 34891926 | + |
| chr6H | 3 | 34892472 | 34892398 | + |
| chr6H | 4 | 34893434 | 34893231 | + |
| chr6H | 5 | 34894042 | 34893848 | + |
| chr6H | 6 | 34894525 | 34894361 | + |
| chr6H | 7 | 34896103 | 34894938 | + |
| chr6H | 8 | 34896414 | 34896192 | + |
| chr6H | 9 | 34897245 | 34896755 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g03690.1 | +1 | 2e-155 | 396 | 184/217 (85%) | protein|beta-amylase, putative, expressed |
| TAIR PP10 | AT5G45300 @ ARAPORT AT5G45300.1 @ TAIR |
+1 | 9e-115 | 324 | 167/293 (57%) | Symbols: BMY2, BAM8 | beta-amylase 2 | chr5:18353636-18356696 FORWARD LENGTH=689 |
| BRACH PP3 | Bradi3g02800.3.p | +1 | 0.0 | 533 | 267/294 (91%) | pacid=32818288 transcript=Bradi3g02800.3 locus=Bradi3g02800 ID=Bradi3g02800.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2771 bp)
>HORVU6Hr1G015670.15 2771 150831_barley_pseudomolecules CCTCTCCCTCCCCCGGCCCAATTCCAGGGTGCTTTCCAGGCCACTTCTCTGGAAACCCCA GTTTTTACCAACTCTCTGAACAGCTATGCCGTTGGGACGCCATTAGATTCCCAGGCTTCA GCCCTACAAACAGATGATAGCCTGTCACCGTCGTCATTGGACTCAGTCGTGGTGGCAGAG CAATGCATAAAGAATGAGAGCTTTGGGAATTCAAGTTCAGCCAATTCTTTGAACTGTATG GGTAGTGATCAGCTATTGAGAGCATCAGCAGTATGGGCGGGTGATTACACGAAAACTCCA TATATACCATTGTACGCCTCTTTGTCTATGGGCATTATCAATTGTTATTGCCAACTGGTT GATCCTGAGGCTGTACGTGCTGAACTAAGGCATCTGAAATCTTTGAATGTTGATGGAGTT ATTGTTGACTGTTGGTGGGGGATTGTAGAAGCCTGGACTCCTCAAAAGTATGAATGGTCT GGCTACAGGGACCTTTTTGGTATCATTAAAGAGTTCAAGCTAAAAGTTCAGGTTGTGTTA TCATTTCATGGGTCTGGGGAGTGTGGATCTGGTCCTGTGTTAATTGCTCTTCCTAGGTGG GTAATGGAAATTGCACAAGAGAACCAAGATATATTTTTTACCGATCGAGAAGGTAGGAGG AATACAGAATGCCTCTCCTGGGGAATTGACAAAGAGCGTGTCCTTCGAGGGAGAACTGGC ATCGAGGTTTATTTTGATTTCATGAGGAGCTTTCATATGGAATTCAGAACCCTATCTGAA GAGGGTCTTATTTCTGCTATTGAGATTGGATTGGGTGCTTCTGGAGAGCTAAGATACCCT TCGTGTTCAGAAAAAATGGGCTGGAGATATCCTGGTATTGGTGAGTTTCAGGTATATGCA AAAGAACCTACGGCAATCAGCCTTGACACGGGGGCATTTGTTTTGGGCCCGTGGGCCTGA TAATGCTGGCTACTATAATTCAAGGTCACACGAGACTGGCTTTTTTTGTGACGGAGGTGA TTATGACAGCTACTATGGGCGGTTCTTCCTTAATTGGTATTCTGGAATCCTTATAGATCA TGTGGATCAGGTGCTCTCACTTGCTACTCTTGCATTTGATGGAGCAGCAGTTGTGGTGAA GGTATGCTATATCTCGGTACAGTTGTTGGTTGGGCCTTGAAGCACCATATTATCTCTAAT TTTCTATAAAGCTTCACATATATTCCTTTTCTGTTCTTCTCTGCCTCTCTAGTTTCCCAT GTATATCACATCAATCAAATTTTGTACGTAATGGGTATCTGTTAAGCATTTTTTCTCCTC TATTTTATATTCCGGGTTGATCTTCTGTTAAAAGCAACCAAAGATTGTTGAAACACTGGT ATAGTAATATAGCTTTGACAAGTTATGGGGAGTTGAATGCCTAATCATGAAGCATCCCTC AGATTTAGATGAGACATGGTAAGGAAGCTACTCCCTCTGTTTCAAATTATAAGATGTTTT GGACATTTCAATTTGGCCTACATACCTACTGAAATGAGTGAACAAACACAGTCTATATAC ATTTGATTCAGAAAAAGTTTGAACATCTTATAATTCGAAACTGAGGGAGTAATCATTTGA TCGACTATTTAAAGAATTGAGACAAAAAGGAAGCTGAATGTTTTTACTTGTCCAATTTGT GAAATACTGTAATCATAGTATGATATACATGTATTAAGCTGATCACTTGCCTGGTCACAT AGTACAGCCTTTCTATATAGCATATGATAAGTCCATGGAACTTACCCCTCATATTTCTCT TGCCAATTCGGCTGCTTCATGACAAGACAATTATCTTTCCTCAGATCCCCTCCATCTATT GGTGGTACAGAACTGCAAGCCATGCTGCAGAGCTTACTGCAGGATTCTACAACCCTACAA ATCGAGATGGATACTCTCCAGTTTTCAGAATGCTCAAGAAGCATTCCATAATTCTTAAAG TGGTTTGTTATGGCCCAGAATTTACAGTTCAGGAGAATGATGAAGCACTTGCTGATCCAG AAGGTTTAACCTGGCAGGTTATGAACGCAGCATGGGATCATGGTCTATCTGTAAGTGTAG AGAGTGCTCTTCCATGTCTTGACGTGGACATGTACTCTCGGATCCTTGACACAGCAAAGC CGAGGAATGATCCTGACCGACACCATCTCTCATTCTTTGCATACCGTCAGCGAACTCCAT TCCTTTTGCAGAGAGATGTGTGCTTCTCAGAGCTTGAGACCTTCGTAAAGTGTATGCACG GGGAGGCTATCCAGAACTTTGTAGATTGAACTTGCTTTGGCGACGCATTCCCTGTTATGT TGCAGCTCGCGTTCTGCAAATTTCCGGATTCCCTGCGTAGCTATCACAAGCTTTAACTCA TATTGCTGATTGCTGCGTTCCGGCCATCCCCGCCTTTGCTATGGGTCAGCTAACCAGATG GCACTGAAACTGTTGTGCTGGTGGTGGGCAAGGATTAGCATCCCTTATCTGTGGTACAGG GCTGATAGTTCAGCAAGTTTTTACCGTGGTGTGACCTAGCTTGGGCTAGAAAGATGGAAA GAATGGCGATGTATATATCTAATAGTACTACACTATCATGCTCTAAGATGCAAAGAAAGC GTCTGAATTCTCCATGGTAAGCTGCTCGATGACAAGTGCTTGCAGTGGGTTTCCGAGGGA TTCCTTGAACTCGCTTTTCCCTTTCTATTTTCCTTTGAACCTTATTGGGACATTTGTATT TCCGTTATGAA