- Transcript HORVU6Hr1G015670.1
- Transcript IDHORVU6Hr1G015670.1
- Gene IDHORVU6Hr1G015670
Barley RTD
Exon Structure of HORVU6Hr1G015670.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 34891586 | 34891175 | + |
| chr6H | 2 | 34892472 | 34891926 | + |
| chr6H | 3 | 34893434 | 34893231 | + |
| chr6H | 4 | 34894042 | 34893848 | + |
| chr6H | 5 | 34894525 | 34894361 | + |
| chr6H | 6 | 34895187 | 34894927 | + |
| chr6H | 7 | 34896103 | 34895891 | + |
| chr6H | 8 | 34896414 | 34896192 | + |
| chr6H | 9 | 34896687 | 34896522 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g03690.1 | +3 | 0.0 | 848 | 394/452 (87%) | protein|beta-amylase, putative, expressed |
| TAIR PP10 | AT5G45300 @ ARAPORT AT5G45300.2 @ TAIR |
+3 | 0.0 | 603 | 281/452 (62%) | Symbols: BMY2, BAM8 | beta-amylase 2 | chr5:18353636-18356696 FORWARD LENGTH=687 |
| BRACH PP3 | Bradi3g02800.2.p | +3 | 0.0 | 883 | 412/447 (92%) | pacid=32818287 transcript=Bradi3g02800.2 locus=Bradi3g02800 ID=Bradi3g02800.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2386 bp)
>HORVU6Hr1G015670.1 2386 150831_barley_pseudomolecules CCCTCCCTCCCCACCGCGCAGATCGGCCGCCGGGCGGAGCGCCATGGCCACGAAGCACCC CCACGGGGACGCTGATCCGGCCACCTCGCCTCCCCCGCCGCCGAGCCGCCGCCCGCGCGG CTTCGCCTCCGCCTCCGCCCCCGCGGCGCCTCCTCCCCCGGCGCGGCGGCGCGGCGAGCG CGAGAGGGAGCGGGAGAAGGAGCGTACGAAGCTGCGGGAGCGGCAACGGCGCGCCATCAC GAGCCGCATGCTGGCCGGGCTGCGGCAGCACGGCAACTTCCCCCTCCCCGCCCGCGCCGA CATGAACGACGTCCTCGCCGCCCTCGCCCGCGCCGCCGGGTGGACCGTCCACCCCGACGG CACCACCTTCCTCTCCTCTCCCCCGCCCCCCCCCCCCCCCCNNNNNNNNNNNCAGGGTGC TTTCCAGGCCACTTCTCTGGAAACCCCAGTTTTTACCAACTCTCTGAACAGCTATGCCGT TGGGACGCCATTAGATTCCCAGGCTTCAGCCCTACAAACAGATGATAGCCTGTCACCGTC GTCATTGGACTCAGTCGTGGTGGCAGAGCAATGCATAAAGAATGAGAGCTTTGGGAATTC AAGTTCAGCCAATTCTTTGAACTGTATGGGTAGTGATCAGGTGAGCAGAGTTTCCAGTTT GATTCTCTTTACGGATGCTTGTGGTATGCCAATGTATATAAACCAGATATTCTAATTGCA TCATATAGCATTATTTGTACGGACCAGTAATCTATCATGCAATTGCGTTGTCGAGTTCAC TGATCCTTCATTTCGCAGCCCGCCTTTTCGTTTGGGCTTTCTGATTTAGCAAATTGAATT GGGTGGCAACCTCATGTTTTTCTTTTATTGTTCAATTGGAACAGCTATTGAGAGCATCAG CAGTATGGGCGGGTGATTACACGAAAACTCCATATATACCATTGTACGCCTCTTTGTCTA TGGGCATTATCAATTGTTATTGCCAACTGGTTGATCCTGAGGCTGTACGTGCTGAACTAA GGCATCTGAAATCTTTGAATGTTGATGGAGTTATTGTTGACTGTTGGTGGGGGATTGTAG AAGCCTGGACTCCTCAAAAGTATGAATGGTCTGGCTACAGGGACCTTTTTGGTATCATTA AAGAGTTCAAGCTAAAAGTTCAGGTTGTGTTATCATTTCATGGGTCTGGGGAGTGTGGAT CTGGTCCTGTGTTAATTGCTCTTCCTAGGTGGGTAATGGAAATTGCACAAGAGAACCAAG ATATATTTTTTACCGATCGAGAAGGTAGGAGGAATACAGAATGCCTCTCCTGGGGAATTG ACAAAGAGCGTGTCCTTCGAGGGAGAACTGGCATCGAGGTTTATTTTGATTTCATGAGGA GCTTTCATATGGAATTCAGAACCCTATCTGAAGAGGGTCTTATTTCTGCTATTGAGATTG GATTGGGTGCTTCTGGAGAGCTAAGATACCCTTCGTGTTCAGAAAAAATGGGCTGGAGAT ATCCTGGTATTGGTGAGTTTCAGTGTTATGACAGGTATATGCAAAAGAACCTACGGCAAT CAGCCTTGACACGGGGGCATTTGTTTTGGGCCCGTGGGCCTGATAATGCTGGCTACTATA ATTCAAGGTCACACGAGACTGGCTTTTTTTGTGACGGAGGTGATTATGACAGCTACTATG GGCGGTTCTTCCTTAATTGGTATTCTGGAATCCTTATAGATCATGTGGATCAGGTGCTCT CACTTGCTACTCTTGCATTTGATGGAGCAGCAGTTGTGGTGAAGATCCCCTCCATCTATT GGTGGTACAGAACTGCAAGCCATGCTGCAGAGCTTACTGCAGGATTCTACAACCCTACAA ATCGAGATGGATACTCTCCAGTTTTCAGAATGCTCAAGAAGCATTCCATAATTCTTAAAG TGGTTTGTTATGGCCCAGAATTTACAGTTCAGGAGAATGATGAAGCACTTGCTGATCCAG AAGGTTTAACCTGGCAGGTTATGAACGCAGCATGGGATCATGGTCTATCTGTAAGTGTAG AGAGTGCTCTTCCATGTCTTGACGTGGACATGTACTCTCGGATCCTTGACACAGCAAAGC CGAGGAATGATCCTGACCGACACCATCTCTCATTCTTTGCATACCGTCAGCGAACTCCAT TCCTTTTGCAGAGAGATGTGTGCTTCTCAGAGCTTGAGACCTTCGTAAAGTGTATGCACG AATAATGTGCATAACAATGTGGTCATGGTGCAGACTGTCAGTTTGAATCATATGATCCGC TCTGCTGTTACATTCAGTATGTGGATGGGACCAATAAAAGGGCATAAATCGAACATATCA CCATTAAGCATTGCTGCCTTGTATCATTTGTGCTGTTACTCTTTAG