- Transcript HORVU6Hr1G011910.6
- Transcript IDHORVU6Hr1G011910.6
- Gene IDHORVU6Hr1G011910
Barley RTD
Exon Structure of HORVU6Hr1G011910.6
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 22229409 | 22229249 | + |
| chr6H | 2 | 22229650 | 22229501 | + |
| chr6H | 3 | 22229842 | 22229786 | + |
| chr6H | 4 | 22231287 | 22231195 | + |
| chr6H | 5 | 22231497 | 22231402 | + |
| chr6H | 6 | 22233100 | 22232423 | + |
| chr6H | 7 | 22233288 | 22233205 | + |
| chr6H | 8 | 22233733 | 22233388 | + |
| chr6H | 9 | 22234312 | 22233825 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g03050.1 | +3 | 1e-55 | 190 | 93/117 (79%) | protein|dimethyladenosine transferase, putative, expressed |
| TAIR PP10 | AT1G01860 @ ARAPORT AT1G01860.1 @ TAIR |
+3 | 2e-47 | 171 | 112/195 (57%) | Symbols: PFC1 | Ribosomal RNA adenine dimethylase family protein | chr1:304439-306275 REVERSE LENGTH=343 |
| BRACH PP3 | Bradi3g02232.3.p | +3 | 1e-81 | 264 | 172/193 (89%) | pacid=32819654 transcript=Bradi3g02232.3 locus=Bradi3g02232 ID=Bradi3g02232.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2153 bp)
>HORVU6Hr1G011910.6 2153 150831_barley_pseudomolecules CTCACCGCCGGCCGCCGCCGCCCCGCGGCCGTATCCGGCCCACATCCGCCGTCGCAACGG CCGCATCCGACGGCGGCGGCGCGGGCGACGACTACCACTCGACCATCCGCTCACTCAACT CGCACGGCCGCCGCCACGTCCCCCGCAAATCCCTCGGTCAGAACTACATGCTGAACGCGA GGGTGAACGAGGAGCTGGTGGCGGCGGCGGGGGTAGAGGTAGGGGACGTCGTGCTCGAGA TAGGACCCGGGACGGGCTCGCTCACCGCCGCTCTGCTCGCCGCCGGCGCCACCGTCGTCG CCGTCGAGAAGGATAAGCATATGGCTACACTTGTGAGAGATAGGTTTGGATCCACAGAGC AATTGAAGGTCATTGAAGAAGATATTACAAAATTTCACGTTCACTCCCATTTTCTCCCTA TCCTGGACGAGAAATCCCGTGGCACGAAAAAATATGCCAAGGTTGTAGCAAACTTACCAT TCAATGTCAGCACTGAAGTTGTCAAACAAATTCTCCCAATGGGAGATGTTTTCTCTGTCA TGGTGCTCATGCTTCAGGATGAAGCAGCGCTACGCCTTGCAAATGCTTCAATACAAACAC CAGAGTACCGACCTATCAATGTGTTTGTGAATTTCTACTCTGGTAAGAGGTCTTCCTTTA GTTTTACCCGTTTGATACCTTCGTGACACTGGAATACTCTGTATCTGCATTCCATCGTCC AGGCTTGAAAATAGGTTTACTCTTTTGTTCTTTTCGTTTTTGCAAGTAATCATGCTTTTA TCCGAGGAAAACGGTAAGTTGACTCTCATAATGGGTATATTGTTTTGGGCTTTATACAAG GGATTGTTTTTCTCCATCGTTTCGATTTCGACATGCAGATGCTCTGATGTACATTAGCTA GTATTCTTGAGTAGTTAAATGATCAAAAGTATCGTCATTGCCCGCATCTGATGGGAGCGC AGTGGCGTCTCCTTGCCTACCTGGGTTCAATCCCTGTGTGGGCAGATTATATCTCTTTTG TACTCTAGTAACTGCTACTGTCTACTGTGTAGCTATGCAATTCATGCCTTGATAGTCACC AAATCATCTGAACTGTTTTTCAGTGTCTTAACAATTCGCTTAGTATGCCTAGGTACATAT ATCACAGTTAATGAAATGCATACGTTATCTTTGTTTTTTTAGAACCCGAATACAAGTTCA AGGTAGAGAGGGCCAACTTTTTCCCTCAACCGACGGTTGACGGTGGTGTTATAAGGTTTA AAATAAAGGATGCTGGGGAGTATCCGCCTGTTAGTTCTAACAAAAGTTTTTTTTCAATGG TGAACTCCGCGTTCAATGGGAAGCGCAAGATGCTTCGGAAATCACTTCAACACCTATATT CTTCTGTTGAAATCGAGGCCGCTCTTACCAATATCGGTCTTCCGCCTACAGTAAGCTCTC CCTCCATCCATCCATCCTTGCTCGTGCACTAAATTCATTATTGCTGCAGGCTAGACCGTC GGAACTGATGATGGATGATTTCGTGAGGTTGCACAATCACCTGGGAAAAGTATGACCACC CCTGCATTCAAAATGCGTATGGAATCATCTTATTGGTTTGCTCGCTGGACTATGCATGCC TCTGAAGTGATTTTGTTCCCAGCTAGAGGGCACTGCAACTTGCAGATCATCCTTGCTGAC AGTGACCGCCTAGTATTCTTCAGCAGTCCCACAGCCTTCACCGCAACATAATTGGTGGCA CAGCTTCAGCCCACGGTGTCCTTGCATGGATGATCATAGTGATTGTGCTATAAGTTCAAA ACCAATGATAATGCGCAGGGCATGATTTGCTCGCACAAGAATTGCAGTTCTTTTCCTTAT CGCAGATAGCATCCCTGCAAGAGGGAAGATACGCGGGCGTTGCATGTGTATAATTTACTG CAACTATCTATCCTCTTGTACTAATCTTCGCAGGTTGGAGGCAGAAATGTAGGGATCAAA TGTCTGTCAGAACAATCTGAAGACCAGGCAAAGATGCTAGCTGCTCATAGTAAATTGCCA ATAGCGTTTTTATGTGTGGACATAGATGGTAGATAGAGGTACAGCCATTGCATTTTGAGC TTAAGTTTTGGCTATAAACTGCAACAAAAAGGTGCAAATGCTCAGTGTTTGAG