- Transcript HORVU6Hr1G011910.34
- Transcript IDHORVU6Hr1G011910.34
- Gene IDHORVU6Hr1G011910
Barley RTD
Exon Structure of HORVU6Hr1G011910.34
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 22240272 | 22236815 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g03040.2 | +3 | 2e-62 | 144 | 95/125 (76%) | protein|RNA recognition motif containing protein, expressed |
| TAIR PP10 | AT5G52040 @ ARAPORT AT5G52040.3 @ TAIR |
+2 | 2e-33 | 100 | 45/56 (80%) | Symbols: RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131791-21133318 FORWARD LENGTH=329 |
| BRACH PP3 | Bradi3g02226.1.p | +3 | 1e-68 | 155 | 108/117 (92%) | pacid=32814082 transcript=Bradi3g02226.1 locus=Bradi3g02226 ID=Bradi3g02226.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3458 bp)
>HORVU6Hr1G011910.34 3458 150831_barley_pseudomolecules CTCAGATCTGGCGATTTTTTCATATTTTTTTCTTCAATAGGACTCTAGCTCGCCTTTTGC TCTGCGTCGCTCCGTCTGAGCGGGCGCGCTGGCGGGTTCTGGGCATGCACGGGAGAGTTA GGTTCAGCTGCGCCGGACGTGGAAATCTGGCAACGGGGCCTGCCACCGAGAGAATCCGTG TGCTGTTTAAGCTGTGATGAAAATTCGCTCGTGGTTGTCAGGTGCCTGCTACCGCGGCGT TGCGGTCCACCGGGATGTTCTGTTACGGTTTATCATGTAGTATGCGCTTGTTAGGTATTG CGGGATTCAGCCGTTTTGGGTTGTTGGCATATGGGCACTGTATCCGTTCCAAAATATAGT GTGCGCGTGTGTAGATTTAATTCCGAAGTCGAAAAACTTTGTAGAGTTTGACAAAGTTCA TAGGAGAAAAGCATCAACATCTGGATGCACTATAGTTTGGATTAGAGGGAGTATCATGGA TGCTGCTCCACTCCCCTGTGCTCCCGTTTGAACTAATATTGTATTGTCATCCTAGAGATT TTCATTCGCATGCTGGCTGATAAATAAACTGGAAGGACACCATTTATTTTGCTGGTCAGC TGATCAGTTGTGCTGGACACCAAGGTGTTTGAGCTATAGATACGCAGTTTGCATGCCGTT TGGGTAAATGAATCTAGCTAGCATATGTGAAGCTCCTCATAAGTACCTCAAATGTGCTGA GCTTTTGCAAATCTGCTACTGATGTTTATGTCTGTAGTTTCTGTGTAAAATGTCTGGAAT AATGACTGCATGAATCTGCTATCATCTATTGAGCATGTGTATCATAACCGCCCACGATTA ACAGTTTCTCTGACTTGTATCTTCGAATAGGTTTGGGGAAGATCTGTTTATACAGCAACA CCAACATGAGGCCAATTTTCTGCGGGAACCTTGACTATGATGCCCGCCAATCTGAAGTCG AGCGTCTTTTTGGCAAATATGGAAGAGTGGAGCGAGTTGACATGAAGACAGGTATGAACT CTTTGTGTCCATTCTCTAGATTTAAGTTGTCCTTTTTACCATCTGATTTTATGTTGCACC TATTTGGTGGTGTCGGTCATTAAGGCAACAAACTCTTCTAAGAAATAAACTTACAAGTGT AATGCTTGAGTAAACTGCTATTTACTCAAAAGGGATATTAATGTGCACAAATACATTAGC TCCATACAAGTCTTCCAAGGGAATGGAGTGAATGGTGTGCTCAGTTAGCTTTAACAAGAT TGGGTGGGTGCCAAGTGGAAACAGCCGTCCTCGTTGCTGCAAAGACTGCCATCGCTTCTT CAACCATCCCTGGTGCAGTATGATGCGGTCTGTTATAAGATATGATTGGACAAAGTGTAT CAGGCCAGAGACTGTTCAGCAGAATCAGATTATGTTTATTGTTATTTTGTCAAAGTCATT GGACAAGTCCAAACCAGGATATAAATTTAGAAAAAGAAGTTATTTCTTAAAGTTTAGGTC CAGTACTCAATTGTTTCTTTGCCGCAGGAATATCATGAAGCATCTGTGCTCTTCCTGGTT GATGGACTGGGCTCTACCTTTCCTGCCTGAGCCCCTGCCTCATGCCCTGTCCATTTCCAG GAGTTCACAGTCCACCATGACATCTGTCACTTGGAAACGACCACCTTGTGACTGATGTCT TACTTTTACATCAATGTTGCACCCTCCTCCCCCGCCCGGTTACACTCTCCCACGTCGACC AAACCATGCCAATCTCATGGCCGGCTGGAGAAGAGTAGAGGTTCCACCGGCAGCACCACC ACCTCTTTTGGTGTACCACGAACGTTTGGATTATCGTACTCTGACATCATTTAGTGCAAC ATGCAAAAGGTCTGTTCTTATTTGTGCTGACATATCAATTTGTAGCTTCCTGAGGTGATC TTGAAGTTTTTTTTCTCTTGCAAAGATTTTGATCGCCATACAAGCCATTATCTGTTTACC CTAAGGGTTAGTAAAATGTGCGAGCTACTTTAAATAACTAGTCATCTTTCCATGTTCAAC ATTGAAGGATTTGCGTTCGTCTACATGGAAGATGAACGTGATGCTGAAGATGCTATCCGT AGACTTGATAGAACTGACTTTGGTAGAACAGGGAGGAGACTGAGAGTCGAATGGACAAAG GTGCGCAGTTGTAAACTAATAATAAAAGTCATCTCTCAGTAGCCTTATTTTTCTTAATAT CCGTCGTCTATTATTTGTGTAGGAGGATCGCAGTGGTGGTCGGAAAGGAAATGGAAAGAG ATCTCCAAGCAGCGTGAAACCAACCAAAACCTTGTTTGTGATCAACTTTGATCCAATCAA CACAAGGACAAGAGATCTGGAGAAGCACTTTGATCTGTATGGCAAGATTGCAAATATCAG AATCAGAAGGAACTTTGCATTTGTCCAGTATGAAACACAGGAGGATGCTACTAAAGCTCT GGACGGTACTAATGGAAGGTACTAACACTTGTTTCTTGATGACAGTACTTACACTGTCAT GAATAGTTCTTTTGCTATATGGCTTACAGTAATAGCTTGATTATAACTGAATTCATTCTT TTGGCAGCACTGTGATGGACAGGGTGATTTCTGTTGAGTATGCGCTTCGTGACGATGATG AAAAAAGGAACGGGTACAGTCCAGACAGGAGAGGAGGCCGTGATAGGTCTCCTGACAGAA GGGACAATCGTGGTAGGTCGGCAAGTCCTTATGGCAGAGGGCGGGAAAGGGGCAGCCCAG ACTATGGCAGGGGCAGGGAGAGGGGCAGCCCGGACTATGGCAAGGGCGGTGCCAGAGATA GTCCTGACTATGTCCGTGGTGGAAGCCCGTACGGCGGCAAAGGGGATGACAGGGCTAGCC CCAAGTATGACCGTGAACGCCGTGAAGCCAGTCCTGCCTATGACAGGCGCCGCAGGTTCG TATGCTGAAAACGCTTCATTATGCTTGCTAAATCGTGTTGAAGCACCACACTGAACATGT TCTCCGCTGTTGTGCAGCCGCTCGCCTGCAAGGGAAGATAGGGACTGAAGCTGTACCATG GATGGCTGCGCTCAATCCTGGGTGCTTCGGACCAAATGGATGCACCGTCCTAGTGCGATG TTCGCTCAAGTTGGTTATGTTAGGCAGCCAGGAACTTCTGTAATATCTCTCTATTAGCTA GCTCTAGCTGAATGCTTTGTCGATTTAGTTTGAACTGTGATTGTTAGCTTGAACTTTGTG CAAAGGGATTCTTCCGGTGAGACCATTTGCGGAGCGATGAGATGTACCGTGTATCGACCG ACAGCAGTATTCTAGCTTTGCACTTTGGTTATTCTTCCATATGTTCCTATTCTTCACTAT TGTTTCTGCTTGTGTGCTGGTCGACATGGTTGAGGATGGTGACCTTTGAGGAAGATAGAG GCTAATGTTGTGGTGGTGACGTCCATGGCTTCGGCAAC