- Transcript HORVU6Hr1G011910.33
- Transcript IDHORVU6Hr1G011910.33
- Gene IDHORVU6Hr1G011910
Barley RTD
Exon Structure of HORVU6Hr1G011910.33
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 22236688 | 22236582 | + |
| chr6H | 2 | 22238683 | 22237685 | + |
| chr6H | 3 | 22238974 | 22238862 | + |
| chr6H | 4 | 22239292 | 22239057 | + |
| chr6H | 5 | 22239749 | 22239402 | + |
| chr6H | 6 | 22240113 | 22239832 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g03040.1 | +2 | 1e-98 | 305 | 190/231 (82%) | protein|RNA recognition motif containing protein, expressed |
| TAIR PP10 | AT5G52040 @ ARAPORT AT5G52040.4 @ TAIR |
+2 | 2e-65 | 219 | 144/255 (56%) | Symbols: RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131881-21133318 FORWARD LENGTH=324 |
| BRACH PP3 | Bradi3g02226.1.p | +2 | 1e-111 | 338 | 210/228 (92%) | pacid=32814082 transcript=Bradi3g02226.1 locus=Bradi3g02226 ID=Bradi3g02226.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2085 bp)
>HORVU6Hr1G011910.33 2085 150831_barley_pseudomolecules CCCCTGTCTGTCTCCGTCCTCCCCCCGCTCCACTCGCCGCCGGGTCCGAACCAGCCGCGC CCCCCGTCGAAAACCTAGGGTTCCGCCCTCCCCCGCCCCCTCCGAAGGTTTGGGGAAGAT CTGTTTATACAGCAACACCAACATGAGGCCAATTTTCTGCGGGAACCTTGACTATGATGC CCGCCAATCTGAAGTCGAGCGTCTTTTTGGCAAATATGGAAGAGTGGAGCGAGTTGACAT GAAGACAGGTATGAACTCTTTGTGTCCATTCTCTAGATTTAAGTTGTCCTTTTTACCATC TGATTTTATGTTGCACCTATTTGGTGGTGTCGGTCATTAAGGCAACAAACTCTTCTAAGA AATAAACTTACAAGTGTAATGCTTGAGTAAACTGCTATTTACTCAAAAGGGATATTAATG TGCACAAATACATTAGCTCCATACAAGTCTTCCAAGGGAATGGAGTGAATGGTGTGCTCA GTTAGCTTTAACAAGATTGGGTGGGTGCCAAGTGGAAACAGCCGTCCTCGTTGCTGCAAA GACTGCCATCGCTTCTTCAACCATCCCTGGTGCAGTATGATGCGGTCTGTTATAAGATAT GATTGGACAAAGTGTATCAGGCCAGAGACTGTTCAGCAGAATCAGATTATGTTTATTGTT ATTTTGTCAAAGTCATTGGACAAGTCCAAACCAGGATATAAATTTAGAAAAAGAAGTTAT TTCTTAAAGTTTAGGTCCAGTACTCAATTGTTTCTTTGCCGCAGGAATATCATGAAGCAT CTGTGCTCTTCCTGGTTGATGGACTGGGCTCTACCTTTCCTGCCTGAGCCCCTGCCTCAT GCCCTGTCCATTTCCAGGAGTTCACAGTCCACCATGACATCTGTCACTTGGAAACGACCA CCTTGTGACTGATGTCTTACTTTTACATCAATGTTGCACCCTCCTCCCCCGCCCGGTTAC ACTCTCCCACGTCGACCAAACCATGCCAATCTCATGGCCGGCTGGAGAAGAGTAGAGGTT CCACCGGCAGCACCACCACCTCTTTTGGTGTACCACGAACGTTTGGATTATCGTACTCTG ACATCATTTAGTGCAACATGCAAAAGGATTTGCGTTCGTCTACATGGAAGATGAACGTGA TGCTGAAGATGCTATCCGTAGACTTGATAGAACTGACTTTGGTAGAACAGGGAGGAGACT GAGAGTCGAATGGACAAAGGAGGATCGCAGTGGTGGTCGGAAAGGAAATGGAAAGAGATC TCCAAGCAGCGTGAAACCAACCAAAACCTTGTTTGTGATCAACTTTGATCCAATCAACAC AAGGACAAGAGATCTGGAGAAGCACTTTGATCTGTATGGCAAGATTGCAAATATCAGAAT CAGAAGGAACTTTGCATTTGTCCAGTATGAAACACAGGAGGATGCTACTAAAGCTCTGGA CGGTACTAATGGAAGCACTGTGATGGACAGGGTGATTTCTGTTGAGTATGCGCTTCGTGA CGATGATGAAAAAAGGAACGGGTACAGTCCAGACAGGAGAGGAGGCCGTGATAGGTCTCC TGACAGAAGGGACAATCGTGGTAGGTCGGCAAGTCCTTATGGCAGAGGGCGGGAAAGGGG CAGCCCAGACTATGGCAGGGGCAGGGAGAGGGGCAGCCCGGACTATGGCAAGGGCGGTGC CAGAGATAGTCCTGACTATGTCCGTGGTGGAAGCCCGTACGGCGGCAAAGGGGATGACAG GGCTAGCCCCAAGTATGACCGTGAACGCCGTGAAGCCAGTCCTGCCTATGACAGGCGCCG CAGCCGCTCGCCTGCAAGGGAAGATAGGGACTGAAGCTGTACCATGGATGGCTGCGCTCA ATCCTGGGTGCTTCGGACCAAATGGATGCACCGTCCTAGTGCGATGTTCGCTCAAGTTGG TTATGTTAGGCAGCCAGGAACTTCTGTAATATCTCTCTATTAGCTAGCTCTAGCTGAATG CTTTGTCGATTTAGTTTGAACTGTGATTGTTAGCTTGAACTTTGTGCAAAGGGATTCTTC CGGTGAGACCATTTGCGGAGCGATGAGATGTACCGTGTATCGACC