- Transcript HORVU6Hr1G011910.30
- Transcript IDHORVU6Hr1G011910.30
- Gene IDHORVU6Hr1G011910
Barley RTD
Exon Structure of HORVU6Hr1G011910.30
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 22236688 | 22236573 | + |
| chr6H | 2 | 22237825 | 22237685 | + |
| chr6H | 3 | 22238974 | 22238862 | + |
| chr6H | 4 | 22239292 | 22239057 | + |
| chr6H | 5 | 22239749 | 22239402 | + |
| chr6H | 6 | 22240152 | 22239832 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g03040.1 | +2 | 6e-128 | 371 | 220/261 (84%) | protein|RNA recognition motif containing protein, expressed |
| TAIR PP10 | AT5G52040 @ ARAPORT AT5G52040.2 @ TAIR |
+2 | 2e-89 | 275 | 169/289 (58%) | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131081-21133318 FORWARD LENGTH=357 |
| BRACH PP3 | Bradi3g02226.1.p | +2 | 6e-142 | 406 | 241/258 (93%) | pacid=32814082 transcript=Bradi3g02226.1 locus=Bradi3g02226 ID=Bradi3g02226.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1275 bp)
>HORVU6Hr1G011910.30 1275 150831_barley_pseudomolecules ACGGACCTGCCCCTGTCTGTCTCCGTCCTCCCCCCGCTCCACTCGCCGCCGGGTCCGAAC CAGCCGCGCCCCCCGTCGAAAACCTAGGGTTCCGCCCTCCCCCGCCCCCTCCGAAGGTTT GGGGAAGATCTGTTTATACAGCAACACCAACATGAGGCCAATTTTCTGCGGGAACCTTGA CTATGATGCCCGCCAATCTGAAGTCGAGCGTCTTTTTGGCAAATATGGAAGAGTGGAGCG AGTTGACATGAAGACAGGATTTGCGTTCGTCTACATGGAAGATGAACGTGATGCTGAAGA TGCTATCCGTAGACTTGATAGAACTGACTTTGGTAGAACAGGGAGGAGACTGAGAGTCGA ATGGACAAAGGAGGATCGCAGTGGTGGTCGGAAAGGAAATGGAAAGAGATCTCCAAGCAG CGTGAAACCAACCAAAACCTTGTTTGTGATCAACTTTGATCCAATCAACACAAGGACAAG AGATCTGGAGAAGCACTTTGATCTGTATGGCAAGATTGCAAATATCAGAATCAGAAGGAA CTTTGCATTTGTCCAGTATGAAACACAGGAGGATGCTACTAAAGCTCTGGACGGTACTAA TGGAAGCACTGTGATGGACAGGGTGATTTCTGTTGAGTATGCGCTTCGTGACGATGATGA AAAAAGGAACGGGTACAGTCCAGACAGGAGAGGAGGCCGTGATAGGTCTCCTGACAGAAG GGACAATCGTGGTAGGTCGGCAAGTCCTTATGGCAGAGGGCGGGAAAGGGGCAGCCCAGA CTATGGCAGGGGCAGGGAGAGGGGCAGCCCGGACTATGGCAAGGGCGGTGCCAGAGATAG TCCTGACTATGTCCGTGGTGGAAGCCCGTACGGCGGCAAAGGGGATGACAGGGCTAGCCC CAAGTATGACCGTGAACGCCGTGAAGCCAGTCCTGCCTATGACAGGCGCCGCAGCCGCTC GCCTGCAAGGGAAGATAGGGACTGAAGCTGTACCATGGATGGCTGCGCTCAATCCTGGGT GCTTCGGACCAAATGGATGCACCGTCCTAGTGCGATGTTCGCTCAAGTTGGTTATGTTAG GCAGCCAGGAACTTCTGTAATATCTCTCTATTAGCTAGCTCTAGCTGAATGCTTTGTCGA TTTAGTTTGAACTGTGATTGTTAGCTTGAACTTTGTGCAAAGGGATTCTTCCGGTGAGAC CATTTGCGGAGCGATGAGATGTACCGTGTATCGACCGACAGCAGTATTCTAGCTTTGCAC TTTGGTTATTCTTCC